Os07g0469600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os07g0469600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.51 | 0.331 | 11.1 | -0.295 | 0.45 | 0.917 | 1.03 | -1.07 | -0.173 | 19 | 21.17 | 6116 | -- | -- |
| 49.61 | 0.328 | 11 | -0.138 | 0.463 | 1.05 | 1 | -- | -0.218 | 19 | 18.25 | 9041 | -- | -- |
| 51.92 | 0.336 | 11.1 | -0.322 | 0.471 | 0.927 | -- | -0.953 | -0.251 | 18.6 | 21.1 | 7506 | -- | -- |
| 52.24 | 0.337 | 11 | -0.155 | 0.465 | 1.06 | -- | -- | -0.214 | 18.5 | 18 | 9107 | -- | -- |
| 62.47 | 0.368 | 11.1 | -0.405 | -- | 0.924 | -- | -1.42 | -0.277 | -- | 23.01 | 7733 | -- | -- |
| 75.56 | 0.408 | 11 | 0.474 | 0.465 | -- | 1.05 | -- | 0.162 | 19.2 | -- | -- | -- | -- |
| 78.37 | 0.415 | 11 | 0.454 | 0.473 | -- | -- | -- | 0.166 | 18.8 | -- | -- | -- | -- |
| 63.37 | 0.371 | 11 | -0.124 | -- | 1.02 | -- | -- | -0.191 | -- | 18.4 | 7785 | -- | -- |
| 52.59 | 0.338 | 11 | -- | 0.463 | 0.935 | -- | -- | -0.19 | 18.5 | 20.11 | 9118 | -- | -- |
| 90.06 | 0.443 | 10.9 | 0.444 | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
| 83.82 | 0.428 | 11 | -- | 0.467 | -- | -- | -- | 0.115 | 18.9 | -- | -- | -- | -- |
| 54.14 | 0.343 | 11 | -- | -- | 1.32 | -- | -- | -0.0785 | -- | 18.38 | 504 | -- | -- |
| 95.26 | 0.456 | 11 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.82 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 9 | 49.38 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 19 |
| 10 | 49.40 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 11 | 49.40 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 15 | 49.54 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 16 | 49.54 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 27 | 49.69 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 28 | 49.69 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 31 | 49.70 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 42 | 49.78 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 52 | 49.83 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 70 | 49.95 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 76 | 49.99 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 87 | 50.04 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 108 | 50.10 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 117 | 50.12 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 123 | 50.13 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 8 | 14 |
| 124 | 50.14 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 128 | 50.15 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 139 | 50.18 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 145 | 50.19 | wind | 3.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 149 | 50.20 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 201 | 50.35 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 212 | 50.38 | temperature | 20.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 228 | 50.41 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 243 | 50.45 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 300 | 50.55 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 332 | 50.61 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 346 | 50.64 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 348 | 50.64 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 372 | 50.68 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 384 | 50.69 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 401 | 50.71 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 440 | 50.76 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 458 | 50.79 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 4 | NA |
| 489 | 50.82 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 504 | 50.83 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 7 | 5 |
| 509 | 50.83 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 513 | 50.84 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 19 | NA |
| 517 | 50.84 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 518 | 50.84 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 535 | 50.85 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 6 |
| 555 | 50.86 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 595 | 50.89 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 4 | 18 |
| 614 | 50.90 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 16 |
| 652 | 50.92 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 18 | 20 |
| 822 | 51.01 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 854 | 51.02 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 856 | 51.02 | temperature | 20.0 | 4320 | > th | dose dependent | no | NA | NA |
| 880 | 51.02 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 887 | 51.03 | temperature | 20.0 | 270 | > th | dose dependent | no | NA | NA |
| 900 | 51.04 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 4 |