Os07g0469200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os07g0469200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 111.08 | 0.495 | 13.5 | 0.256 | 3.42 | 0.898 | 0.519 | -0.796 | 0.618 | 19.6 | 64.64 | 4 | -- | -- |
| 112.82 | 0.498 | 13.5 | 0.224 | 3.43 | 0.888 | 0.385 | -- | 0.616 | 19.6 | 64.64 | 4 | -- | -- |
| 111.41 | 0.495 | 13.5 | 0.242 | 3.42 | 0.907 | -- | -0.726 | 0.623 | 19.6 | 64.64 | 4 | -- | -- |
| 113.23 | 0.499 | 13.5 | 0.215 | 3.43 | 0.879 | -- | -- | 0.618 | 19.6 | 65 | 4 | -- | -- |
| 734.49 | 1.27 | 13.5 | 0.208 | -- | 0.769 | -- | -1.46 | 0.524 | -- | 50 | 5 | -- | -- |
| 129.87 | 0.534 | 13.6 | 0.228 | 3.36 | -- | 0.31 | -- | 0.547 | 20.4 | -- | -- | -- | -- |
| 130.17 | 0.534 | 13.6 | 0.219 | 3.36 | -- | -- | -- | 0.548 | 20.4 | -- | -- | -- | -- |
| 738.94 | 1.27 | 13.5 | 0.18 | -- | 0.63 | -- | -- | 0.537 | -- | 60.72 | 5 | -- | -- |
| 114.44 | 0.501 | 13.5 | -- | 3.42 | 0.88 | -- | -- | 0.594 | 19.6 | 65 | 4 | -- | -- |
| 759.1 | 1.29 | 13.5 | 0.2 | -- | -- | -- | -- | 0.513 | -- | -- | -- | -- | -- |
| 131.43 | 0.536 | 13.6 | -- | 3.36 | -- | -- | -- | 0.523 | 20.4 | -- | -- | -- | -- |
| 739.53 | 1.27 | 13.5 | -- | -- | 0.616 | -- | -- | 0.524 | -- | 63 | 2 | -- | -- |
| 760.16 | 1.29 | 13.5 | -- | -- | -- | -- | -- | 0.491 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.08 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 17 |
| 3 | 101.08 | humidity | 70 | 10 | > th | dose dependent | rect. | 23 | 18 |
| 43 | 104.32 | radiation | 30 | 10 | < th | dose dependent | sin | 6 | NA |
| 53 | 104.60 | humidity | 80 | 10 | > th | dose independent | rect. | 23 | 18 |
| 110 | 106.24 | radiation | 10 | 30 | < th | dose dependent | rect. | 7 | 10 |
| 120 | 106.56 | radiation | 20 | 10 | < th | dose independent | rect. | 23 | 17 |
| 162 | 107.36 | radiation | 1 | 10 | > th | dose dependent | sin | 8 | NA |
| 185 | 107.74 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 231 | 108.37 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 243 | 108.57 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 13 |
| 282 | 109.05 | humidity | 80 | 10 | > th | dose independent | rect. | 1 | 16 |
| 336 | 109.61 | radiation | 20 | 10 | > th | dose independent | sin | 7 | NA |
| 344 | 109.69 | humidity | 70 | 10 | > th | dose dependent | rect. | 10 | 7 |
| 361 | 109.87 | humidity | 90 | 10 | < th | dose dependent | rect. | 17 | 21 |
| 364 | 109.90 | radiation | 1 | 270 | < th | dose independent | rect. | 21 | 20 |
| 408 | 110.33 | humidity | 90 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 423 | 110.43 | temperature | 20 | 30 | > th | dose independent | rect. | 5 | 8 |
| 425 | 110.44 | humidity | 80 | 10 | > th | dose independent | rect. | 10 | 6 |
| 436 | 110.54 | radiation | 1 | 30 | > th | dose independent | rect. | 18 | 19 |
| 443 | 110.57 | humidity | 50 | 90 | > th | dose dependent | rect. | 11 | 6 |
| 444 | 110.58 | radiation | 1 | 30 | > th | dose independent | rect. | 5 | 8 |
| 474 | 110.73 | humidity | 90 | 10 | < th | dose dependent | sin | 6 | NA |
| 480 | 110.74 | humidity | 80 | 10 | > th | dose independent | rect. | 7 | 10 |
| 486 | 110.78 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 492 | 110.80 | humidity | 50 | 270 | > th | dose dependent | rect. | 11 | 4 |
| 517 | 110.96 | humidity | 50 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 534 | 111.03 | humidity | 80 | 270 | > th | dose dependent | rect. | 11 | 3 |
| 573 | 111.20 | radiation | 20 | 10 | > th | dose independent | rect. | 16 | 22 |
| 589 | 111.28 | radiation | 20 | 10 | > th | dose independent | rect. | 7 | 7 |
| 653 | 111.46 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 15 |
| 670 | 111.52 | humidity | 70 | 10 | > th | dose dependent | rect. | 7 | 10 |
| 704 | 111.67 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 18 |
| 715 | 111.73 | humidity | 70 | 10 | > th | dose dependent | sin | 3 | NA |
| 745 | 111.83 | radiation | 20 | 10 | < th | dose independent | sin | 6 | NA |
| 755 | 111.88 | humidity | 80 | 270 | > th | dose independent | rect. | 11 | 3 |
| 774 | 111.95 | radiation | 1 | 30 | < th | dose independent | sin | 3 | NA |
| 814 | 112.09 | humidity | 60 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 840 | 112.16 | radiation | 20 | 90 | < th | dose dependent | rect. | 11 | 6 |
| 851 | 112.22 | radiation | 1 | 30 | > th | dose independent | sin | 3 | NA |
| 867 | 112.26 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 868 | 112.26 | temperature | 10 | 10 | > th | dose dependent | rect. | 5 | 8 |
| 870 | 112.27 | humidity | 60 | 10 | > th | dose dependent | no | NA | NA |
| 883 | 112.31 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 9 |
| 914 | 112.39 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 915 | 112.40 | humidity | 80 | 10 | > th | dose independent | sin | 2 | NA |
| 946 | 112.48 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 965 | 112.55 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 19 |
| 988 | 112.64 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 1 |