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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0468900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.12 (0.027) R2 : 0.412
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.575 (0.0643) R2dC : 0.106 R2C : 0.0826
β3 : 1.37 (0.0863) R2dE : 0.331 R2E : 0.305
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0407 (0.0569) R2dN8 : 0.000922 R2N8 : -0.00148
σ : 0.506
deviance : 118.11
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_____
C
peak time of C : 12
E
wheather : temperature
threshold : 25.63
memory length : 1784
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
114.56 0.503 5.06 0.898 0.603 1.11 -0.148 2.37 0.0254 12.1 22.84 1882 -- --
116.18 0.502 5.11 0.287 0.581 1.31 -0.149 -- -0.00104 12 25.7 1789 -- --
114.63 0.499 5.06 0.901 0.608 1.11 -- 2.4 0.0293 12.1 22.9 1897 -- --
116.29 0.502 5.11 0.272 0.583 1.32 -- -- -0.0071 12.1 25.7 1790 -- --
135.79 0.543 5.07 0.936 -- 1.04 -- 2.5 0.0449 -- 22.98 1742 -- --
171.38 0.614 5.09 0.668 0.545 -- -0.133 -- 0.0973 13 -- -- -- --
171.45 0.613 5.09 0.664 0.546 -- -- -- 0.0968 13 -- -- -- --
137.08 0.545 5.12 0.269 -- 1.27 -- -- -0.00577 -- 25.74 1715 -- --
118.11 0.506 5.12 -- 0.575 1.37 -- -- -0.0407 12 25.63 1784 -- --
189.96 0.644 5.1 0.643 -- -- -- -- 0.0861 -- -- -- -- --
183.05 0.633 5.11 -- 0.535 -- -- -- 0.0229 13 -- -- -- --
138.74 0.549 5.13 -- -- 1.31 -- -- -0.0524 -- 25.6 1718 -- --
200.87 0.662 5.12 -- -- -- -- -- 0.0148 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 109.44 temperature 30 90 < th dose dependent rect. 9 18
2 110.11 temperature 30 270 < th dose dependent rect. 6 21
4 111.16 temperature 30 270 < th dose dependent rect. 7 18
11 113.00 temperature 10 270 > th dose dependent rect. 10 23
22 114.42 temperature 20 1440 > th dose dependent rect. 5 7
25 114.49 temperature 20 720 > th dose dependent rect. 18 21
26 114.53 temperature 10 1440 > th dose dependent rect. 6 6
32 114.66 temperature 10 720 > th dose dependent rect. 3 21
60 115.15 temperature 20 1440 > th dose dependent sin 3 NA
65 115.18 temperature 10 720 > th dose dependent rect. 18 21
80 115.25 temperature 10 270 > th dose dependent rect. 24 23
98 115.40 temperature 20 1440 > th dose dependent rect. 10 1
149 115.75 temperature 20 1440 > th dose dependent rect. 6 16
167 115.83 temperature 10 1440 > th dose dependent rect. 6 15
198 115.92 temperature 25 1440 > th dose dependent rect. 1 18
202 115.93 temperature 30 1440 < th dose dependent rect. 7 2
204 115.93 temperature 30 1440 < th dose dependent rect. 6 5
227 115.98 temperature 25 1440 > th dose dependent rect. 9 10
247 116.03 temperature 10 1440 > th dose dependent sin 1 NA
450 116.36 temperature 25 1440 > th dose dependent rect. 9 23
478 116.40 temperature 25 1440 > th dose dependent rect. 9 20
486 116.41 temperature 25 1440 > th dose dependent rect. 14 23
487 116.42 temperature 25 1440 > th dose dependent no NA NA
500 116.43 temperature 25 1440 > th dose dependent rect. 5 23
525 116.46 temperature 10 90 > th dose dependent rect. 3 16
820 117.14 temperature 25 1440 > th dose dependent rect. 15 4
873 117.27 temperature 30 1440 < th dose independent rect. 9 3
959 117.50 temperature 25 1440 > th dose dependent rect. 16 1
970 117.52 radiation 20 1440 > th dose independent rect. 16 1
990 117.53 temperature 30 1440 < th dose independent rect. 16 20
995 117.54 temperature 30 1440 < th dose independent rect. 15 22