Os07g0468500 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0468500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine-rich repeat, plant specific containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.08	(0.0504)	R²	:	0.0912
β₁	:	-0.468	(0.184)	R²_dD	:	0.0137	R²_D	:	0.00542
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	8.23	(1.3)	R²_dE	:	0.504	R²_E	:	-0.443
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	-19.6	(3.11)	R²_dD*E	:	0.5	R²_D*E	:	-0.401
γ₁	:	0.0735	(0.106)	R²_dN8	:	0.00128	R²_N8	:	-0.00329
σ	:	0.929
deviance	:	397.95
__

_____

C
peak time of C	:	--
E
wheather	:	wind
threshold	:	0.6593
memory length	:	13
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	sin
peak or start time of G	:	13.4
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
389.81	0.928	3.07	-0.441	0.327	7.83	-0.809	-18.8	0.0703	8.76	0.6999	14	13.3	--
423.86	0.966	3.01	-0.354	0.349	0.481	-0.952	--	0.0249	8.2	0.6999	14	13.3	--
391.54	0.922	3.07	-0.478	0.338	8.54	--	-19.8	0.0725	9.05	0.6482	13	13.3	--
420.8	0.962	3.01	-0.421	0.355	1.13	--	--	0.0311	9.64	1.301	10	8.35	--
397.95	0.929	3.08	-0.468	--	8.23	--	-19.6	0.0735	--	0.6593	13	13.4	--
424.6	0.966	3.02	-0.329	0.341	--	-1.01	--	0.0217	8.16	--	--	--	--
427.66	0.968	3.01	-0.357	0.341	--	--	--	0.0232	8.57	--	--	--	--
426.37	0.966	3.02	-0.411	--	1.02	--	--	0.0344	--	1.072	3	5.93	--
424.11	0.964	3	--	0.346	1.04	--	--	0.0775	9.74	1.168	3	6.77	--
434.18	0.974	3.02	-0.356	--	--	--	--	0.0263	--	--	--	--	--
431.01	0.971	3.01	--	0.339	--	--	--	0.063	8.65	--	--	--	--
430.73	0.97	3.01	--	--	0.919	--	--	0.0794	--	1.059	3	5.54	--
437.51	0.976	3.01	--	--	--	--	--	0.0658	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	383.76	wind	1.0	10	< th	dose independent	rect.	8	18
4	385.83	wind	1.0	10	< th	dose dependent	rect.	9	18
13	394.97	wind	1.0	10	< th	dose dependent	sin	19	NA
16	395.06	wind	1.0	10	< th	dose dependent	rect.	1	2
17	395.66	wind	1.0	10	< th	dose independent	sin	19	NA
18	395.72	temperature	25.0	10	< th	dose independent	rect.	10	1
20	395.78	humidity	60.0	90	< th	dose dependent	rect.	8	2
35	395.86	wind	1.0	10	< th	dose independent	rect.	1	1
38	395.94	temperature	20.0	30	> th	dose independent	rect.	9	1
39	396.05	wind	5.0	90	> th	dose dependent	rect.	23	1
40	396.07	temperature	25.0	90	< th	dose independent	rect.	8	3
44	396.22	humidity	60.0	90	< th	dose independent	rect.	8	2
60	396.36	wind	9.0	1440	> th	dose independent	rect.	22	4
68	396.36	wind	9.0	1440	> th	dose dependent	rect.	22	4
76	396.41	wind	9.0	1440	> th	dose independent	rect.	22	1
80	396.41	wind	9.0	1440	> th	dose dependent	rect.	22	1
85	396.73	wind	3.0	10	< th	dose dependent	rect.	9	1
86	396.81	wind	9.0	90	> th	dose dependent	rect.	22	12
87	396.94	wind	9.0	270	> th	dose independent	rect.	22	4
95	396.94	wind	9.0	270	> th	dose dependent	rect.	22	4
163	397.75	humidity	60.0	1440	> th	dose independent	rect.	4	5
164	397.75	wind	1.0	30	> th	dose independent	rect.	10	23
178	398.34	wind	1.0	30	< th	dose independent	rect.	8	2
183	398.68	humidity	60.0	1440	> th	dose independent	rect.	6	3
185	398.90	humidity	60.0	1440	> th	dose independent	rect.	22	11
189	399.16	humidity	60.0	1440	> th	dose independent	rect.	1	8
253	399.83	wind	1.0	10	< th	dose independent	rect.	21	5
257	399.84	wind	1.0	10	> th	dose independent	sin	19	NA
262	399.90	wind	1.0	10	< th	dose dependent	rect.	21	6
314	400.38	wind	9.0	30	< th	dose independent	rect.	10	23
319	400.68	humidity	90.0	30	< th	dose dependent	rect.	9	1
324	400.78	humidity	60.0	4320	< th	dose dependent	rect.	8	1
337	400.81	wind	9.0	30	< th	dose dependent	rect.	9	1
344	400.93	wind	7.0	1440	> th	dose dependent	rect.	1	2
345	400.94	wind	7.0	1440	> th	dose independent	rect.	1	2
373	401.13	humidity	60.0	1440	> th	dose independent	rect.	20	13
374	401.13	wind	9.0	90	> th	dose dependent	rect.	11	1
383	401.31	humidity	60.0	4320	< th	dose independent	rect.	8	1
423	401.64	radiation	10.0	30	> th	dose independent	rect.	9	1
426	401.66	atmosphere	1000.0	30	> th	dose independent	rect.	10	23
427	401.69	humidity	80.0	90	< th	dose independent	rect.	22	1
428	401.69	radiation	1.0	30	> th	dose dependent	rect.	9	1
455	402.23	humidity	80.0	90	< th	dose dependent	rect.	22	1
457	402.29	wind	9.0	30	> th	dose independent	rect.	11	1
472	402.57	atmosphere	1000.0	30	> th	dose independent	rect.	9	1
479	402.71	temperature	10.0	1440	> th	dose independent	rect.	10	1
482	402.71	atmosphere	995.0	1440	> th	dose independent	rect.	10	1
485	402.71	temperature	10.0	1440	> th	dose independent	rect.	11	23
514	402.82	wind	9.0	30	< th	dose independent	rect.	9	1
515	402.82	temperature	10.0	30	> th	dose independent	rect.	9	1
517	402.82	humidity	50.0	30	> th	dose independent	rect.	9	1
519	402.82	atmosphere	1015.0	30	< th	dose independent	rect.	9	1
521	402.82	precipitation	0.1	30	< th	dose independent	rect.	9	1
522	402.82	temperature	10.0	30	> th	dose independent	rect.	10	23
523	402.82	precipitation	0.1	30	< th	dose dependent	rect.	9	1
531	402.94	humidity	90.0	30	< th	dose independent	rect.	9	1
533	402.98	precipitation	0.1	30	< th	dose independent	rect.	10	23
534	402.98	precipitation	0.1	30	< th	dose dependent	rect.	10	23
594	403.20	humidity	60.0	10	< th	dose independent	rect.	10	1
601	403.27	temperature	10.0	30	> th	dose dependent	rect.	9	1
725	403.94	temperature	25.0	270	< th	dose independent	rect.	6	4
733	404.03	wind	1.0	10	< th	dose dependent	rect.	8	10
802	404.43	atmosphere	995.0	30	> th	dose dependent	rect.	9	1
825	404.73	temperature	30.0	30	< th	dose independent	rect.	10	23
826	404.75	humidity	90.0	14400	< th	dose independent	rect.	22	9
850	405.01	temperature	20.0	30	> th	dose independent	rect.	20	14
859	405.04	humidity	90.0	14400	< th	dose independent	rect.	22	4
865	405.12	humidity	50.0	1440	> th	dose independent	rect.	10	1
868	405.24	wind	3.0	43200	< th	dose dependent	rect.	13	4
869	405.25	wind	1.0	10	< th	dose independent	rect.	8	10
876	405.28	wind	3.0	43200	< th	dose dependent	rect.	15	1
881	405.31	wind	1.0	10	< th	dose independent	rect.	8	8
883	405.31	radiation	40.0	43200	> th	dose independent	rect.	15	17
918	405.44	wind	1.0	43200	> th	dose independent	rect.	14	2
935	405.48	atmosphere	1015.0	10	< th	dose dependent	rect.	9	1
945	405.49	humidity	80.0	14400	> th	dose dependent	rect.	22	4
952	405.54	wind	3.0	43200	< th	dose dependent	rect.	12	7
957	405.61	wind	1.0	43200	< th	dose independent	rect.	14	2
959	405.62	precipitation	0.1	43200	< th	dose independent	rect.	3	1
960	405.62	precipitation	0.1	43200	< th	dose dependent	rect.	3	1
978	405.73	wind	1.0	30	> th	dose independent	rect.	9	1
979	405.73	precipitation	0.1	43200	> th	dose independent	rect.	3	1