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Os07g0467900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 2) (NADH-plastoquinone oxidoreductase chain 2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0314) R2 : 0.485
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.767 (0.0804) R2dC : 0.105 R2C : 0.0517
β3 : -1.43 (0.119) R2dE : 0.203 R2E : 0.269
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.596 (0.0704) R2dN8 : 0.122 R2N8 : 0.196
σ : 0.577
deviance : 153.69
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_____
C
peak time of C : 5.23
E
wheather : temperature
threshold : 9.698
memory length : 8365
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
139.93 0.556 10.4 1.83 0.699 -1.73 0.223 10.9 -0.441 4.96 25.48 3254 -- --
155.13 0.585 10.6 -0.648 0.546 -1.63 -0.0653 -- -0.801 8.11 -17.95 10374 -- --
139.74 0.551 10.3 2 0.69 -1.92 -- 12.6 -0.491 4.94 26.2 3306 -- --
153.07 0.576 10.6 -0.265 0.794 -1.36 -- -- -0.648 5.71 -58.71 8799 -- --
165.06 0.598 10.3 2.2 -- -2 -- 13.5 -0.442 -- 26.3 3277 -- --
180.57 0.63 10.7 -0.966 0.733 -- 0.114 -- -1.03 5.51 -- -- -- --
180.61 0.629 10.7 -0.965 0.734 -- -- -- -1.03 5.51 -- -- -- --
171.53 0.613 10.6 -0.649 -- -1.6 -- -- -0.798 -- 4.648 40790 -- --
153.69 0.577 10.6 -- 0.767 -1.43 -- -- -0.596 5.23 9.698 8365 -- --
208.6 0.675 10.7 -0.941 -- -- -- -- -1.01 -- -- -- -- --
205.17 0.67 10.7 -- 0.718 -- -- -- -0.922 5.57 -- -- -- --
182.02 0.63 10.6 -- -- -1.81 -- -- -0.703 -- 4.648 40790 -- --
231.97 0.711 10.7 -- -- -- -- -- -0.907 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 132.86 wind 1 43200 > th dose independent rect. 14 1
2 133.04 wind 1 43200 < th dose dependent rect. 14 1
3 133.25 wind 1 43200 < th dose dependent rect. 24 2
4 134.14 humidity 80 43200 > th dose independent rect. 21 1
6 135.09 humidity 80 43200 > th dose independent rect. 20 3
7 135.42 wind 1 43200 < th dose independent rect. 24 2
9 135.81 humidity 80 43200 < th dose independent rect. 21 1
10 135.96 humidity 80 43200 < th dose independent rect. 20 3
13 136.07 humidity 70 43200 < th dose dependent rect. 20 16
15 136.13 humidity 80 43200 < th dose dependent rect. 20 2
22 136.55 humidity 60 43200 > th dose independent rect. 20 17
31 136.85 humidity 70 43200 < th dose dependent sin 8 NA
41 137.09 radiation 20 43200 > th dose independent rect. 9 1
45 137.11 wind 1 43200 > th dose independent rect. 24 1
46 137.12 radiation 1 43200 > th dose independent rect. 18 11
47 137.15 humidity 60 43200 > th dose independent sin 8 NA
50 137.26 humidity 70 43200 < th dose dependent rect. 10 2
66 137.53 radiation 1 14400 < th dose dependent rect. 4 1
67 137.55 wind 3 43200 > th dose independent rect. 9 6
72 137.60 radiation 30 43200 < th dose independent rect. 9 1
85 137.76 wind 3 43200 < th dose dependent rect. 9 2
86 137.77 wind 5 43200 > th dose independent rect. 14 1
89 137.80 wind 5 43200 < th dose independent rect. 14 1
90 137.80 wind 3 43200 < th dose independent rect. 9 6
92 137.89 wind 3 43200 < th dose dependent rect. 8 4
97 137.94 wind 1 43200 > th dose dependent rect. 13 2
107 138.04 wind 9 43200 < th dose dependent rect. 14 1
128 138.29 humidity 80 43200 < th dose independent rect. 19 10
131 138.32 radiation 1 43200 > th dose independent rect. 18 1
150 138.37 radiation 1 43200 < th dose independent rect. 18 11
156 138.46 wind 3 43200 > th dose independent rect. 20 1
177 138.59 humidity 60 43200 < th dose independent rect. 19 18
183 138.63 humidity 70 43200 < th dose independent rect. 19 15
200 138.67 wind 3 43200 < th dose independent rect. 9 1
206 138.73 wind 1 43200 < th dose dependent rect. 11 1
211 138.75 wind 3 43200 < th dose independent rect. 20 1
223 138.86 radiation 20 43200 > th dose dependent rect. 9 1
229 138.89 wind 1 43200 > th dose dependent rect. 9 8
230 138.90 humidity 60 43200 < th dose independent sin 7 NA
241 138.94 wind 1 43200 < th dose dependent rect. 21 5
245 138.99 wind 1 43200 < th dose dependent rect. 8 18
266 139.14 wind 9 43200 < th dose dependent rect. 9 8
278 139.21 wind 5 43200 < th dose dependent rect. 9 6
284 139.23 radiation 1 43200 < th dose dependent rect. 24 5
300 139.31 humidity 70 43200 < th dose independent rect. 24 11
304 139.32 radiation 1 43200 < th dose independent rect. 18 7
316 139.35 radiation 1 43200 < th dose independent rect. 18 3
320 139.35 wind 1 43200 < th dose dependent rect. 11 15
342 139.42 wind 3 43200 > th dose independent rect. 9 1
347 139.43 radiation 1 43200 < th dose dependent rect. 20 9
364 139.48 humidity 50 43200 > th dose independent rect. 15 18
373 139.52 humidity 60 43200 > th dose independent rect. 11 1
415 139.63 wind 5 43200 > th dose independent rect. 14 6
427 139.67 wind 5 43200 < th dose dependent rect. 19 2
430 139.68 wind 1 43200 > th dose dependent rect. 9 12
448 139.75 wind 1 43200 < th dose independent rect. 14 1
453 139.77 wind 5 43200 < th dose independent rect. 14 6
480 139.84 wind 1 43200 < th dose dependent rect. 8 20
501 139.89 wind 1 43200 > th dose dependent rect. 9 15
506 139.93 wind 9 43200 < th dose dependent rect. 9 12
508 139.94 wind 1 43200 > th dose dependent sin 21 NA
521 139.97 wind 9 43200 < th dose dependent rect. 9 15
530 139.99 wind 1 43200 < th dose dependent rect. 13 13
539 140.02 humidity 60 43200 < th dose dependent rect. 14 19
550 140.05 radiation 40 43200 < th dose dependent rect. 9 1
579 140.12 wind 9 43200 < th dose dependent sin 21 NA
599 140.16 wind 5 43200 < th dose independent rect. 14 10
616 140.19 wind 1 43200 > th dose dependent rect. 13 11
634 140.23 radiation 20 43200 > th dose independent sin 9 NA
663 140.27 wind 3 43200 < th dose independent rect. 19 3
664 140.27 humidity 70 43200 > th dose independent rect. 3 7
667 140.27 temperature 20 4320 > th dose dependent rect. 17 1
674 140.28 wind 9 43200 < th dose dependent rect. 13 11
709 140.34 wind 3 43200 > th dose independent rect. 19 3
754 140.45 wind 3 43200 > th dose independent rect. 8 15
770 140.48 wind 1 43200 < th dose dependent rect. 19 7
776 140.49 radiation 30 4320 < th dose independent rect. 16 16
804 140.53 wind 1 43200 < th dose dependent rect. 10 18
846 140.60 wind 5 43200 > th dose independent rect. 14 10
957 140.76 temperature 20 1440 > th dose dependent rect. 7 1