Os07g0467200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Clone ZZD536 mRNA sequence.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0467200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Clone ZZD536 mRNA sequence.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.89 | 0.354 | 14.2 | -1.22 | 2.36 | -3.38 | 3.19 | -3.05 | -0.571 | 5.55 | 0.61 | 722 | -- | -- |
| 58.15 | 0.355 | 14.2 | -1.36 | 2.23 | -3.11 | 0.942 | -- | -0.594 | 5.34 | 0.4935 | 705 | -- | -- |
| 59.64 | 0.36 | 14.2 | -1.38 | 2.27 | -3.33 | -- | 0.593 | -0.564 | 5.43 | 0.82 | 726 | -- | -- |
| 59.22 | 0.358 | 14.2 | -1.28 | 1.97 | -2.78 | -- | -- | -0.598 | 5.11 | 0.49 | 691 | -- | -- |
| 73.57 | 0.399 | 14.3 | -1.37 | -- | -1.84 | -- | 0.16 | -0.499 | -- | 0.4285 | 1323 | -- | -- |
| 72.65 | 0.4 | 14.2 | -1.07 | 0.383 | -- | -0.728 | -- | -0.473 | 19.4 | -- | -- | -- | -- |
| 74.09 | 0.403 | 14.2 | -1.05 | 0.383 | -- | -- | -- | -0.474 | 19.3 | -- | -- | -- | -- |
| 64.94 | 0.375 | 14.3 | -1.29 | -- | -1.11 | -- | -- | -0.593 | -- | 0.42 | 1265 | -- | -- |
| 99.08 | 0.464 | 14.2 | -- | 1.9 | -2.6 | -- | -- | -0.454 | 4.86 | 1.5 | 661 | -- | -- |
| 81.88 | 0.423 | 14.2 | -1.06 | -- | -- | -- | -- | -0.48 | -- | -- | -- | -- | -- |
| 103.26 | 0.475 | 14.2 | -- | 0.394 | -- | -- | -- | -0.356 | 19.1 | -- | -- | -- | -- |
| 97.05 | 0.459 | 14.2 | -- | -- | -0.663 | -- | -- | -0.349 | -- | 7.72 | 856 | -- | -- |
| 111.45 | 0.493 | 14.2 | -- | -- | -- | -- | -- | -0.363 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.76 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 3 | 54.80 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 14 | 55.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 15 | 55.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 19 | 55.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 38 | 55.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 79 | 55.76 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 90 | 55.85 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 97 | 55.88 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 19 |
| 120 | 56.07 | humidity | 90 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 125 | 56.15 | humidity | 80 | 1440 | > th | dose independent | sin | 21 | NA |
| 136 | 56.18 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 155 | 56.27 | humidity | 80 | 1440 | < th | dose independent | sin | 22 | NA |
| 158 | 56.33 | radiation | 1 | 720 | < th | dose dependent | sin | 1 | NA |
| 175 | 56.45 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 187 | 56.49 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 15 |
| 189 | 56.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 192 | 56.51 | radiation | 1 | 720 | < th | dose dependent | sin | 12 | NA |
| 194 | 56.52 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 196 | 56.52 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 224 | 56.58 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 279 | 56.70 | radiation | 1 | 720 | > th | dose independent | sin | 13 | NA |
| 285 | 56.73 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 295 | 56.80 | radiation | 1 | 1440 | < th | dose independent | sin | 17 | NA |
| 304 | 56.86 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 320 | 56.87 | humidity | 70 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 415 | 57.05 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 417 | 57.05 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 433 | 57.11 | radiation | 1 | 1440 | > th | dose independent | sin | 18 | NA |
| 438 | 57.12 | humidity | 80 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 456 | 57.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 457 | 57.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 470 | 57.18 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 19 |
| 497 | 57.24 | humidity | 70 | 1440 | > th | dose dependent | sin | 20 | NA |
| 534 | 57.32 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 20 |
| 557 | 57.40 | radiation | 1 | 720 | < th | dose independent | sin | 13 | NA |
| 569 | 57.42 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 23 |
| 597 | 57.47 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 20 |
| 644 | 57.59 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 23 |
| 689 | 57.69 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 705 | 57.75 | humidity | 90 | 1440 | > th | dose independent | rect. | 20 | 2 |
| 746 | 57.84 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 18 |
| 776 | 57.93 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 844 | 58.04 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 853 | 58.07 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 883 | 58.13 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 889 | 58.14 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 23 |
| 898 | 58.16 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 16 |
| 948 | 58.26 | radiation | 1 | 720 | < th | dose independent | rect. | 20 | 23 |
| 994 | 58.35 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |