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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0466500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.89 (0.0403) R2 : 0.646
β1 : 2.83 (0.148) R2dD : 0.295 R2D : 0.15
β2 : 1.97 (0.103) R2dC : 0.284 R2C : 0.206
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.29 (0.0862) R2dN8 : 0.233 R2N8 : 0.0802
σ : 0.759
deviance : 262.65
__
_____
C
peak time of C : 16.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
238 0.725 4.95 2.83 1.94 -0.524 1.74 0.502 1.02 16.4 1006 757 -- --
239.08 0.72 4.95 2.83 1.93 -0.523 1.68 -- 1.04 16.4 1006 850 -- --
246.09 0.731 4.95 2.85 1.94 -0.513 -- 0.43 1.04 16.3 1006 849 -- --
246.63 0.731 4.95 2.85 1.92 -0.515 -- -- 1.04 16.3 1006 846 -- --
440.54 0.978 4.98 3.08 -- -0.72 -- 0.207 0.938 -- 1006 883 -- --
255.59 0.749 4.89 2.81 1.96 -- 1.6 -- 1.28 16.3 -- -- -- --
262.65 0.759 4.89 2.83 1.97 -- -- -- 1.29 16.3 -- -- -- --
437.83 0.975 4.97 2.83 -- -0.739 -- -- 0.83 -- 1006 903 -- --
459.83 0.999 5 -- 1.94 -0.44 -- -- 0.865 16.4 1005 382 -- --
472.6 1.02 4.88 2.75 -- -- -- -- 1.24 -- -- -- -- --
473.3 1.02 4.96 -- 1.92 -- -- -- 0.975 16.3 -- -- -- --
648.12 1.19 5.04 -- -- -0.639 -- -- 0.591 -- 1006 920 -- --
671.84 1.21 4.95 -- -- -- -- -- 0.933 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 232.49 radiation 30.0 1440 < th dose independent rect. 20 11
2 232.91 humidity 70.0 10 > th dose dependent rect. 10 9
3 232.99 humidity 70.0 10 > th dose dependent rect. 6 13
9 234.43 humidity 70.0 10 > th dose dependent rect. 8 11
10 234.59 humidity 80.0 14400 > th dose dependent rect. 3 3
14 235.11 radiation 30.0 30 < th dose dependent rect. 6 13
19 235.46 humidity 90.0 14400 < th dose independent rect. 3 3
26 235.76 humidity 70.0 1440 > th dose independent rect. 20 11
27 235.78 atmosphere 1005.0 720 < th dose independent rect. 10 1
28 235.83 radiation 20.0 30 < th dose independent rect. 6 13
34 236.27 atmosphere 1005.0 720 < th dose independent rect. 10 3
35 236.34 humidity 70.0 10 > th dose independent rect. 23 20
36 236.35 humidity 50.0 14400 > th dose dependent rect. 3 3
45 236.65 atmosphere 1005.0 270 < th dose independent rect. 8 14
48 236.73 wind 1.0 14400 < th dose independent rect. 2 5
59 236.96 humidity 80.0 10 > th dose independent rect. 10 9
64 237.17 humidity 70.0 10 > th dose independent rect. 6 13
66 237.19 wind 1.0 43200 < th dose dependent rect. 5 2
70 237.28 radiation 20.0 90 < th dose independent rect. 22 21
90 237.40 wind 5.0 4320 < th dose independent rect. 24 3
91 237.43 wind 1.0 14400 > th dose independent rect. 2 4
96 237.52 wind 5.0 4320 > th dose independent rect. 23 4
104 237.65 humidity 80.0 90 < th dose independent rect. 9 7
109 237.70 wind 1.0 14400 > th dose independent rect. 1 2
118 237.79 radiation 30.0 30 < th dose dependent rect. 11 8
119 237.80 humidity 80.0 10 < th dose independent rect. 9 7
123 237.86 radiation 30.0 43200 < th dose independent rect. 17 3
127 237.94 wind 1.0 43200 < th dose independent rect. 22 9
134 238.04 radiation 40.0 90 < th dose dependent rect. 22 21
138 238.08 wind 5.0 4320 > th dose dependent rect. 23 4
148 238.20 atmosphere 1005.0 720 < th dose independent sin 23 NA
156 238.24 wind 1.0 14400 < th dose dependent rect. 2 5
160 238.26 radiation 10.0 90 < th dose dependent rect. 19 11
168 238.28 atmosphere 1005.0 720 < th dose independent rect. 5 17
186 238.34 atmosphere 1005.0 720 < th dose independent rect. 5 15
221 238.46 humidity 70.0 30 > th dose independent rect. 19 11
225 238.49 atmosphere 1005.0 270 < th dose independent sin 21 NA
242 238.57 humidity 60.0 43200 < th dose independent rect. 9 1
243 238.58 humidity 90.0 14400 < th dose independent rect. 24 1
247 238.59 radiation 20.0 30 < th dose independent rect. 10 9
248 238.59 wind 1.0 43200 < th dose independent rect. 18 14
253 238.60 wind 5.0 4320 > th dose dependent rect. 23 1
262 238.63 humidity 60.0 30 > th dose dependent rect. 23 20
268 238.67 temperature 10.0 1440 > th dose independent rect. 20 11
271 238.67 temperature 30.0 1440 < th dose independent rect. 20 11
275 238.67 humidity 50.0 1440 > th dose independent rect. 20 11
280 238.67 atmosphere 995.0 1440 > th dose independent rect. 20 11
285 238.67 temperature 10.0 1440 > th dose independent rect. 7 13
288 238.67 atmosphere 1005.0 720 > th dose independent rect. 4 13
300 238.71 atmosphere 1005.0 720 > th dose independent rect. 5 11
301 238.72 wind 1.0 43200 > th dose independent rect. 5 2
330 238.86 humidity 60.0 43200 > th dose independent rect. 9 1
345 238.91 atmosphere 1005.0 720 < th dose independent rect. 8 9
377 239.06 radiation 10.0 90 > th dose independent rect. 9 7
380 239.07 radiation 1.0 90 < th dose independent rect. 19 11
390 239.10 wind 9.0 90 < th dose independent rect. 19 11
399 239.14 temperature 10.0 90 > th dose independent rect. 19 11
400 239.14 temperature 30.0 90 < th dose independent rect. 19 11
401 239.14 humidity 50.0 90 > th dose independent rect. 19 11
403 239.14 atmosphere 995.0 90 > th dose independent rect. 19 11
404 239.14 radiation 20.0 90 < th dose independent rect. 19 11
407 239.14 temperature 10.0 90 > th dose independent rect. 6 13
408 239.14 atmosphere 1015.0 90 < th dose independent rect. 6 13
419 239.18 wind 9.0 1440 < th dose independent rect. 24 10
441 239.31 humidity 80.0 10 > th dose independent rect. 8 11
446 239.33 wind 1.0 43200 > th dose independent rect. 22 10
466 239.42 wind 1.0 43200 < th dose dependent rect. 22 9
493 239.53 humidity 70.0 270 > th dose dependent rect. 11 4
498 239.55 atmosphere 1005.0 270 > th dose independent rect. 11 7
518 239.62 humidity 80.0 270 > th dose independent rect. 11 4
541 239.68 atmosphere 1005.0 720 > th dose independent sin 2 NA
566 239.76 wind 1.0 43200 > th dose independent rect. 18 14
576 239.77 wind 1.0 14400 < th dose dependent rect. 2 2
578 239.78 atmosphere 1015.0 90 < th dose independent rect. 19 11
597 239.82 atmosphere 1005.0 270 > th dose independent sin 22 NA
598 239.82 radiation 10.0 270 > th dose independent rect. 8 5
607 239.84 atmosphere 995.0 90 > th dose independent rect. 6 13
619 239.90 wind 9.0 90 < th dose independent rect. 6 13
624 239.91 humidity 90.0 10 < th dose dependent rect. 9 7
626 239.91 atmosphere 995.0 90 > th dose dependent rect. 23 20
650 239.96 wind 7.0 90 < th dose independent rect. 19 20
658 239.99 wind 1.0 43200 < th dose independent sin 10 NA
664 240.00 wind 1.0 14400 < th dose independent rect. 5 2
684 240.05 wind 1.0 43200 < th dose dependent rect. 18 14
689 240.07 atmosphere 1005.0 270 > th dose independent rect. 10 9
700 240.09 humidity 90.0 14400 < th dose independent rect. 2 1
710 240.11 atmosphere 995.0 90 > th dose dependent rect. 15 4
734 240.16 atmosphere 1005.0 270 > th dose independent rect. 13 4
751 240.21 precipitation 0.1 90 < th dose independent rect. 19 11
752 240.21 precipitation 0.1 90 < th dose dependent rect. 19 11
763 240.26 humidity 90.0 14400 > th dose independent rect. 24 6
792 240.33 atmosphere 1015.0 43200 > th dose dependent rect. 3 1
830 240.40 atmosphere 1015.0 43200 > th dose dependent rect. 5 1
835 240.42 radiation 20.0 30 > th dose independent rect. 10 4
841 240.42 radiation 1.0 90 < th dose dependent rect. 19 15
845 240.44 precipitation 0.1 43200 < th dose independent rect. 23 1
846 240.44 precipitation 0.1 43200 < th dose dependent rect. 23 1
875 240.50 precipitation 0.1 43200 > th dose independent rect. 23 1
876 240.50 wind 9.0 4320 < th dose independent rect. 7 3
877 240.50 radiation 10.0 10 < th dose independent rect. 14 5
881 240.50 atmosphere 1005.0 720 > th dose independent rect. 21 21
882 240.50 precipitation 0.1 43200 > th dose dependent rect. 23 1
906 240.53 atmosphere 1015.0 90 < th dose dependent rect. 9 14
931 240.58 humidity 60.0 43200 < th dose independent rect. 24 10
942 240.59 atmosphere 995.0 90 > th dose independent rect. 15 4
971 240.64 humidity 60.0 43200 > th dose independent rect. 24 10
989 240.67 humidity 80.0 720 < th dose independent rect. 10 3