Os07g0465100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os07g0465100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.81 | 0.243 | 9.53 | -0.196 | 0.426 | -0.591 | 0.817 | -2.09 | 0.0538 | 1.46 | 24.3 | 10 | -- | -- |
| 32.28 | 0.267 | 9.57 | -0.498 | 0.415 | -0.396 | 0.136 | -- | -0.0215 | 1.51 | 25.7 | 42 | -- | -- |
| 28.74 | 0.252 | 9.54 | -0.31 | 0.413 | -0.55 | -- | -1.49 | 0.035 | 1.34 | 23.98 | 43 | -- | -- |
| 32.36 | 0.267 | 9.57 | -0.502 | 0.415 | -0.395 | -- | -- | -0.0221 | 1.49 | 25.7 | 11 | -- | -- |
| 37.86 | 0.287 | 9.53 | -0.268 | -- | -0.331 | -- | -1.39 | 0.0646 | -- | 23.97 | 164 | -- | -- |
| 34.66 | 0.276 | 9.55 | -0.406 | 0.323 | -- | 0.128 | -- | 0.0626 | 1.48 | -- | -- | -- | -- |
| 34.73 | 0.276 | 9.55 | -0.41 | 0.323 | -- | -- | -- | 0.0619 | 1.45 | -- | -- | -- | -- |
| 37.59 | 0.286 | 9.56 | -0.532 | -- | -0.464 | -- | -- | -0.00956 | -- | 58.81 | 1026 | -- | -- |
| 38.43 | 0.29 | 9.55 | -- | 0.364 | -0.21 | -- | -- | 0.0684 | 1.43 | 25.7 | 11 | -- | -- |
| 41.15 | 0.3 | 9.55 | -0.397 | -- | -- | -- | -- | 0.0688 | -- | -- | -- | -- | -- |
| 39.16 | 0.293 | 9.54 | -- | 0.316 | -- | -- | -- | 0.108 | 1.41 | -- | -- | -- | -- |
| 44 | 0.309 | 9.53 | -- | -- | 0.295 | -- | -- | 0.147 | -- | 36.7 | 23 | -- | -- |
| 45.31 | 0.314 | 9.54 | -- | -- | -- | -- | -- | 0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.06 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 20 |
| 53 | 26.54 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 71 | 26.79 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 86 | 26.91 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 87 | 26.91 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 88 | 26.92 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 92 | 26.93 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 102 | 26.96 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 103 | 26.96 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 117 | 26.99 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 133 | 27.03 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 136 | 27.04 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 197 | 27.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 219 | 27.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 273 | 27.61 | temperature | 25 | 30 | < th | dose dependent | sin | 11 | NA |
| 277 | 27.62 | temperature | 20 | 10 | > th | dose dependent | sin | 10 | NA |
| 282 | 27.63 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 13 |
| 325 | 27.77 | temperature | 25 | 270 | < th | dose dependent | sin | 14 | NA |
| 374 | 27.89 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 3 |
| 439 | 28.07 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 1 |
| 634 | 28.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 679 | 28.72 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 9 |
| 692 | 28.74 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 1 |
| 717 | 28.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 723 | 28.79 | temperature | 25 | 720 | < th | dose dependent | sin | 19 | NA |
| 866 | 29.00 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 898 | 29.05 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 971 | 29.18 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 3 |
| 978 | 29.19 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 994 | 29.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 7 |