Os07g0463100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA-directed RNA polymerase, 14 to 18 kDa subunit family protein.
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Os07g0463100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA-directed RNA polymerase, 14 to 18 kDa subunit family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.08 | 0.205 | 12.9 | -0.219 | 0.199 | -0.487 | 0.245 | 0.407 | 0.000431 | 20.2 | 21.4 | 2614 | -- | -- |
| 19.41 | 0.205 | 12.9 | -0.112 | 0.2 | -0.515 | 0.228 | -- | 0.0254 | 20.1 | 21.4 | 2604 | -- | -- |
| 19.24 | 0.204 | 12.9 | -0.232 | 0.204 | -0.493 | -- | 0.412 | -0.00159 | 20.1 | 21.4 | 2713 | -- | -- |
| 19.57 | 0.206 | 12.9 | -0.12 | 0.197 | -0.524 | -- | -- | 0.0261 | 20 | 21.4 | 2593 | -- | -- |
| 21.17 | 0.214 | 12.9 | -0.196 | -- | -0.483 | -- | 0.373 | 0.00231 | -- | 21.6 | 2203 | -- | -- |
| 26.7 | 0.242 | 12.9 | 0.152 | 0.209 | -- | 0.236 | -- | 0.184 | 20.7 | -- | -- | -- | -- |
| 26.88 | 0.243 | 12.9 | 0.144 | 0.209 | -- | -- | -- | 0.184 | 20.7 | -- | -- | -- | -- |
| 21.43 | 0.216 | 12.9 | -0.107 | -- | -0.52 | -- | -- | 0.0296 | -- | 21.5 | 2188 | -- | -- |
| 19.61 | 0.206 | 12.9 | -- | 0.207 | -0.447 | -- | -- | 0.0426 | 20.3 | 22.06 | 1398 | -- | -- |
| 29.34 | 0.253 | 12.8 | 0.144 | -- | -- | -- | -- | 0.182 | -- | -- | -- | -- | -- |
| 27.43 | 0.245 | 12.9 | -- | 0.208 | -- | -- | -- | 0.168 | 20.8 | -- | -- | -- | -- |
| 21.47 | 0.216 | 12.9 | -- | -- | -0.423 | -- | -- | 0.0378 | -- | 22.2 | 964 | -- | -- |
| 29.89 | 0.255 | 12.9 | -- | -- | -- | -- | -- | 0.166 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.88 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 2 | 19.02 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 4 | 19.07 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 5 | 19.07 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 14 | 19.21 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 75 | 19.37 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 76 | 19.37 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 12 | NA |
| 89 | 19.38 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 90 | 19.39 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 91 | 19.39 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 107 | 19.42 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 119 | 19.43 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 120 | 19.43 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 122 | 19.43 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 129 | 19.44 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 145 | 19.46 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 152 | 19.47 | wind | 7.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 175 | 19.49 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 187 | 19.51 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 199 | 19.52 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 201 | 19.52 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 203 | 19.52 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 216 | 19.53 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 221 | 19.54 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 281 | 19.59 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 282 | 19.59 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 289 | 19.60 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 291 | 19.60 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 293 | 19.60 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 305 | 19.61 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 326 | 19.61 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 337 | 19.62 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 338 | 19.62 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 341 | 19.62 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 346 | 19.63 | temperature | 20.0 | 4320 | < th | dose independent | sin | 15 | NA |
| 349 | 19.63 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 350 | 19.63 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 362 | 19.63 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 363 | 19.63 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 368 | 19.64 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 391 | 19.65 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 409 | 19.66 | temperature | 20.0 | 4320 | > th | dose independent | sin | 15 | NA |
| 423 | 19.67 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 424 | 19.67 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 433 | 19.67 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 438 | 19.67 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 453 | 19.68 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 455 | 19.68 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 7 | 4 |
| 456 | 19.68 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 493 | 19.69 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 7 | 7 |
| 499 | 19.69 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 14 | 23 |
| 545 | 19.71 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 18 | 16 |
| 552 | 19.72 | wind | 9.0 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 574 | 19.73 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 600 | 19.73 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 609 | 19.73 | radiation | 10.0 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 618 | 19.73 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 3 | 11 |
| 621 | 19.73 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 22 | 16 |
| 629 | 19.74 | wind | 9.0 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 662 | 19.75 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 667 | 19.75 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 690 | 19.75 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 766 | 19.76 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 777 | 19.76 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 21 | 18 |
| 804 | 19.77 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 807 | 19.77 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 3 | 12 |
| 817 | 19.77 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 821 | 19.78 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 833 | 19.78 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 849 | 19.78 | radiation | 10.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 877 | 19.78 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 878 | 19.78 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 16 | 23 |
| 900 | 19.79 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 976 | 19.80 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 3 |