Os07g0462000 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0462000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glutamate--cysteine ligase, GCS2 family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.82	(0.0174)	R²	:	0.00304
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	--	(--)	R²_dE	:	--	R²_E	:	--
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0431	(0.0366)	R²_dN8	:	0.00392	R²_N8	:	0.00304
σ	:	0.327
deviance	:	49.15
__

_____

C
peak time of C	:	--
E
wheather	:	--
threshold	:	--
memory length	:	--
response mode	:	--
dose dependency	:	--
G
type of G	:	--
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
47.57	0.321	2.82	0.0177	0.0854	0.331	0.0557	1.13	0.0468	6.91	1015	10	--	--
47.76	0.324	2.81	0.0485	0.0843	0.381	0.0328	--	0.0546	6.49	1014	14	--	--
47.58	0.324	2.82	0.0186	0.0858	0.33	--	1.13	0.0466	6.76	1015	13	--	--
47.77	0.324	2.81	0.0489	0.0845	0.381	--	--	0.0545	6.44	1014	19	--	--
47.96	0.324	2.82	0.0206	--	0.319	--	1.12	0.0482	--	1015	20	--	--
48.75	0.327	2.82	0.0317	0.0834	--	0.0225	--	0.0452	6.26	--	--	--	--
48.75	0.327	2.82	0.032	0.0835	--	--	--	0.0451	6.26	--	--	--	--
48.14	0.325	2.82	0.0509	--	0.379	--	--	0.0562	--	1014	19	--	--
47.83	0.324	2.82	--	0.0851	0.372	--	--	0.0489	6.41	1014	19	--	--
49.11	0.327	2.82	0.0342	--	--	--	--	0.0469	--	--	--	--	--
48.78	0.327	2.82	--	0.084	--	--	--	0.0415	6.24	--	--	--	--
48.21	0.324	2.82	--	--	0.37	--	--	0.0504	--	1014	19	--	--
49.15	0.327	2.82	--	--	--	--	--	0.0431	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	44.77	atmosphere	1005.0	30	> th	dose dependent	rect.	24	1
4	45.22	atmosphere	1005.0	30	> th	dose independent	rect.	24	1
5	45.31	wind	1.0	30	> th	dose independent	rect.	24	1
6	45.33	wind	3.0	30	< th	dose independent	rect.	24	1
9	45.36	humidity	80.0	30	> th	dose independent	rect.	24	1
12	45.37	temperature	10.0	1440	> th	dose independent	rect.	1	1
15	45.37	temperature	10.0	30	> th	dose independent	rect.	24	1
17	45.37	temperature	30.0	1440	< th	dose independent	rect.	1	1
21	45.37	temperature	30.0	30	< th	dose independent	rect.	24	1
22	45.37	humidity	50.0	1440	> th	dose independent	rect.	1	1
32	45.37	humidity	50.0	30	> th	dose independent	rect.	24	1
35	45.37	atmosphere	995.0	1440	> th	dose independent	rect.	1	1
37	45.37	radiation	1.0	1440	< th	dose independent	rect.	1	1
57	45.37	radiation	1.0	30	< th	dose independent	rect.	24	1
62	45.37	precipitation	0.1	30	< th	dose independent	rect.	24	1
63	45.37	temperature	10.0	30	> th	dose independent	rect.	1	23
64	45.37	temperature	10.0	1440	> th	dose independent	rect.	2	23
67	45.37	radiation	1.0	1440	< th	dose dependent	rect.	1	1
72	45.37	radiation	1.0	30	< th	dose dependent	rect.	24	1
77	45.37	precipitation	0.1	30	< th	dose dependent	rect.	24	1
78	45.40	wind	9.0	30	< th	dose dependent	rect.	24	1
80	45.42	humidity	50.0	30	> th	dose dependent	rect.	24	1
82	45.43	temperature	10.0	30	> th	dose dependent	rect.	24	1
83	45.44	temperature	25.0	30	> th	dose independent	rect.	24	1
85	45.45	humidity	90.0	30	< th	dose independent	rect.	24	1
88	45.48	temperature	25.0	30	> th	dose dependent	rect.	24	1
93	45.57	humidity	90.0	30	< th	dose dependent	rect.	24	1
96	45.66	temperature	30.0	30	< th	dose dependent	rect.	24	1
102	45.75	wind	1.0	30	> th	dose dependent	rect.	24	1
103	45.76	atmosphere	1010.0	30	< th	dose independent	rect.	24	1
109	45.99	wind	9.0	30	< th	dose independent	rect.	1	23
112	46.08	temperature	30.0	10	> th	dose independent	rect.	10	1
117	46.11	atmosphere	1015.0	30	< th	dose dependent	rect.	24	1
119	46.13	atmosphere	1015.0	30	< th	dose independent	rect.	1	23
149	46.34	wind	9.0	1440	< th	dose independent	rect.	1	1
150	46.34	atmosphere	1015.0	30	< th	dose independent	rect.	3	23
160	46.62	radiation	40.0	270	> th	dose dependent	rect.	8	1
182	46.74	temperature	30.0	10	< th	dose independent	sin	8	NA
196	47.14	atmosphere	1005.0	10	> th	dose dependent	rect.	24	3
199	47.18	atmosphere	1005.0	270	> th	dose dependent	rect.	23	2
201	47.22	temperature	25.0	90	> th	dose independent	rect.	24	3
204	47.24	wind	9.0	30	> th	dose independent	rect.	21	5
229	47.24	wind	9.0	30	> th	dose dependent	rect.	21	5
261	47.25	wind	7.0	90	> th	dose independent	rect.	20	1
275	47.25	wind	7.0	90	> th	dose dependent	rect.	20	1
283	47.25	wind	9.0	90	> th	dose dependent	rect.	18	4
308	47.28	humidity	50.0	1440	< th	dose dependent	rect.	13	1
310	47.29	atmosphere	1015.0	720	< th	dose independent	rect.	1	23
348	47.32	radiation	10.0	1440	> th	dose independent	rect.	5	1
351	47.32	wind	9.0	90	> th	dose independent	rect.	18	4
362	47.32	radiation	10.0	1440	> th	dose dependent	rect.	5	1
569	47.37	atmosphere	1015.0	270	< th	dose independent	rect.	10	23
604	47.39	atmosphere	1005.0	10	> th	dose dependent	rect.	24	5
616	47.41	atmosphere	1005.0	30	> th	dose dependent	rect.	2	1
638	47.42	wind	1.0	30	< th	dose independent	rect.	2	1
643	47.42	wind	3.0	30	< th	dose dependent	rect.	2	1
644	47.42	temperature	20.0	30	> th	dose dependent	rect.	2	1
647	47.43	temperature	20.0	30	> th	dose independent	rect.	2	1
648	47.43	temperature	25.0	30	< th	dose independent	rect.	2	1
649	47.43	humidity	80.0	30	> th	dose independent	rect.	2	1
650	47.43	atmosphere	1005.0	30	> th	dose independent	rect.	2	1
655	47.43	wind	9.0	30	< th	dose independent	rect.	3	23
659	47.43	temperature	10.0	30	> th	dose dependent	rect.	2	1
661	47.43	temperature	25.0	30	> th	dose dependent	rect.	9	1
669	47.44	temperature	10.0	30	> th	dose independent	rect.	2	1
672	47.44	humidity	50.0	30	> th	dose independent	rect.	2	1
675	47.44	atmosphere	995.0	30	> th	dose independent	rect.	2	1
677	47.44	atmosphere	1010.0	30	< th	dose independent	rect.	2	1
679	47.44	radiation	1.0	30	< th	dose independent	rect.	2	1
684	47.44	precipitation	0.1	30	< th	dose independent	rect.	2	1
693	47.44	temperature	10.0	30	> th	dose independent	rect.	3	23
694	47.44	atmosphere	1015.0	720	< th	dose independent	rect.	16	23
696	47.44	humidity	50.0	30	> th	dose dependent	rect.	2	1
699	47.44	radiation	1.0	30	< th	dose dependent	rect.	2	1
704	47.44	precipitation	0.1	30	< th	dose dependent	rect.	2	1
717	47.45	atmosphere	1015.0	720	< th	dose independent	rect.	20	17
741	47.47	atmosphere	1015.0	30	< th	dose independent	rect.	3	21
743	47.47	temperature	30.0	30	< th	dose dependent	rect.	2	1
744	47.47	atmosphere	1015.0	30	< th	dose dependent	rect.	2	1
751	47.48	temperature	30.0	10	< th	dose independent	rect.	3	12
762	47.49	atmosphere	1015.0	720	< th	dose independent	rect.	18	15
763	47.49	temperature	30.0	10	< th	dose independent	rect.	1	23
764	47.49	temperature	30.0	30	< th	dose independent	rect.	3	23
776	47.50	temperature	30.0	10	< th	dose independent	rect.	3	9
807	47.51	temperature	25.0	270	> th	dose dependent	rect.	6	1
819	47.52	atmosphere	1015.0	720	< th	dose independent	rect.	10	14
832	47.53	wind	1.0	30	> th	dose independent	rect.	2	1
833	47.53	temperature	25.0	270	> th	dose independent	rect.	6	1
834	47.53	radiation	40.0	270	> th	dose independent	rect.	8	1
893	47.55	atmosphere	1015.0	10	< th	dose independent	sin	7	NA
896	47.55	atmosphere	1015.0	270	< th	dose independent	sin	9	NA
897	47.55	atmosphere	1015.0	10	< th	dose independent	sin	18	NA
905	47.55	atmosphere	1015.0	720	< th	dose independent	rect.	21	9
908	47.55	atmosphere	1015.0	270	< th	dose independent	rect.	17	13
929	47.56	atmosphere	1015.0	720	< th	dose independent	rect.	16	8
931	47.56	atmosphere	1015.0	720	< th	dose independent	rect.	16	15
933	47.56	atmosphere	1015.0	720	< th	dose independent	rect.	18	23
938	47.56	atmosphere	1005.0	10	> th	dose dependent	rect.	21	8
939	47.56	temperature	25.0	90	> th	dose dependent	rect.	24	10
941	47.57	atmosphere	1015.0	10	> th	dose independent	sin	7	NA