Os07g0459400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Regulator of chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein.
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Os07g0459400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Regulator of chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.75 | 0.269 | 10.5 | -0.658 | 0.568 | -3.54 | 3.17 | -2.92 | -0.0648 | 17.6 | 0.4765 | 723 | -- | -- |
| 33.88 | 0.271 | 10.4 | -0.572 | 0.404 | -3.38 | 0.811 | -- | -0.0319 | 17.9 | 0.4806 | 729 | -- | -- |
| 34.68 | 0.274 | 10.4 | -0.545 | 0.159 | -2.99 | -- | 0.869 | 0.00228 | 19.2 | 0.54 | 736 | -- | -- |
| 35.25 | 0.277 | 10.4 | -0.585 | 0.182 | -3.08 | -- | -- | -0.0372 | 19.9 | 0.4898 | 739 | -- | -- |
| 34.47 | 0.273 | 10.4 | -0.587 | -- | -2.87 | -- | 0.872 | -0.0395 | -- | 0.49 | 727 | -- | -- |
| 52.03 | 0.338 | 10.4 | -0.855 | 2.28 | -- | -0.532 | -- | -0.17 | 5.67 | -- | -- | -- | -- |
| 52.72 | 0.34 | 10.4 | -0.857 | 2.28 | -- | -- | -- | -0.167 | 5.68 | -- | -- | -- | -- |
| 35.6 | 0.278 | 10.4 | -0.618 | -- | -2.87 | -- | -- | -0.0488 | -- | 0.4852 | 729 | -- | -- |
| 43.59 | 0.308 | 10.5 | -- | 0.419 | -3.42 | -- | -- | -0.00264 | 20.7 | 0.3805 | 775 | -- | -- |
| 321.83 | 0.838 | 10.5 | -0.785 | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
| 72.09 | 0.397 | 10.4 | -- | 2.26 | -- | -- | -- | -0.072 | 5.69 | -- | -- | -- | -- |
| 45.46 | 0.314 | 10.4 | -- | -- | -2.92 | -- | -- | 0.0111 | -- | 0.18 | 736 | -- | -- |
| 338.09 | 0.858 | 10.4 | -- | -- | -- | -- | -- | -0.026 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.23 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 2 | 31.26 | radiation | 1 | 720 | < th | dose dependent | sin | 13 | NA |
| 22 | 32.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 20 |
| 23 | 32.49 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 20 |
| 24 | 32.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 20 |
| 28 | 32.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 22 |
| 48 | 32.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 20 |
| 57 | 32.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 12 |
| 59 | 33.01 | radiation | 1 | 720 | > th | dose independent | sin | 13 | NA |
| 74 | 33.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 75 | 33.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 77 | 33.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 80 | 33.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 84 | 33.29 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 103 | 33.41 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 111 | 33.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 120 | 33.55 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 18 |
| 127 | 33.59 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 129 | 33.60 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 20 |
| 171 | 33.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 19 |
| 181 | 33.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 18 |
| 201 | 33.99 | radiation | 1 | 720 | < th | dose independent | sin | 13 | NA |
| 202 | 34.00 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 245 | 34.20 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 15 |
| 274 | 34.34 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 294 | 34.41 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 317 | 34.45 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 383 | 34.52 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 22 |
| 388 | 34.55 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 396 | 34.58 | temperature | 25 | 4320 | < th | dose independent | rect. | 14 | 6 |
| 398 | 34.58 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |
| 402 | 34.60 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 410 | 34.63 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 425 | 34.65 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 442 | 34.70 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 447 | 34.70 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 450 | 34.73 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 22 |
| 469 | 34.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 473 | 34.77 | temperature | 25 | 4320 | > th | dose independent | rect. | 13 | 7 |
| 489 | 34.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 13 |
| 490 | 34.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 17 |
| 542 | 34.89 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 639 | 35.00 | temperature | 25 | 4320 | < th | dose independent | sin | 20 | NA |
| 650 | 35.01 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 17 |
| 711 | 35.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 19 |
| 725 | 35.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 17 |
| 786 | 35.14 | temperature | 30 | 4320 | < th | dose dependent | sin | 19 | NA |
| 787 | 35.14 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 842 | 35.18 | temperature | 25 | 4320 | > th | dose independent | sin | 20 | NA |
| 843 | 35.18 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 908 | 35.22 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 23 |
| 963 | 35.26 | temperature | 10 | 4320 | > th | dose dependent | sin | 18 | NA |