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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0457800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.39 (0.0351) R2 : 0.153
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.1 (0.121) R2dE : 0.153 R2E : 0.153
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0126 (0.0738) R2dN8 : 7.02e-05 R2N8 : 8.07e-05
σ : 0.659
deviance : 200.14
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 38.85
memory length : 43
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
176.69 0.625 3.37 0.73 0.206 -1.11 -0.0153 -2.1 0.0872 5.04 49 45 -- --
182.74 0.63 3.38 0.661 0.174 -1.25 -1.09 -- 0.0766 3.1 39.84 43 -- --
176.69 0.619 3.37 0.73 0.206 -1.11 -- -2.11 0.0873 5.03 49 44 -- --
186.33 0.636 3.38 0.703 0.205 -1.2 -- -- 0.0849 5.05 47 54 -- --
178.09 0.622 3.38 0.736 -- -0.951 -- -2.11 0.0929 -- 49 43 -- --
201.76 0.666 3.37 0.662 0.513 -- 1.32 -- 0.0955 14.1 -- -- -- --
208.34 0.676 3.37 0.701 0.514 -- -- -- 0.103 14 -- -- -- --
187.62 0.638 3.38 0.691 -- -1.11 -- -- 0.0891 -- 40 44 -- --
198.43 0.656 3.39 -- 0.247 -1.3 -- -- 0.00818 4.77 39.77 56 -- --
224.24 0.7 3.37 0.679 -- -- -- -- 0.0911 -- -- -- -- --
221.28 0.696 3.39 -- 0.501 -- -- -- 0.025 13.9 -- -- -- --
200.14 0.659 3.39 -- -- -1.1 -- -- 0.0126 -- 38.85 43 -- --
236.41 0.718 3.39 -- -- -- -- -- 0.0157 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.48 humidity 50 30 > th dose dependent rect. 3 23
3 170.61 humidity 50 90 > th dose dependent rect. 7 23
4 171.09 humidity 60 270 > th dose independent rect. 8 22
47 175.20 humidity 90 90 < th dose dependent rect. 16 19
60 175.93 humidity 90 10 < th dose dependent rect. 13 23
66 176.16 humidity 90 10 < th dose dependent rect. 17 17
70 176.36 humidity 90 270 < th dose dependent rect. 13 21
81 176.88 humidity 60 270 > th dose independent rect. 8 9
83 176.89 humidity 90 30 < th dose dependent rect. 6 17
87 176.93 humidity 50 90 > th dose dependent rect. 19 23
88 176.95 humidity 90 30 < th dose dependent rect. 6 15
89 176.97 humidity 60 10 > th dose independent rect. 10 20
105 177.21 radiation 1 720 > th dose independent sin 10 NA
106 177.22 humidity 50 720 > th dose dependent rect. 2 12
108 177.23 humidity 50 30 > th dose dependent no NA NA
123 177.39 radiation 1 720 < th dose independent sin 10 NA
124 177.41 humidity 80 10 < th dose dependent sin 10 NA
125 177.41 humidity 90 10 < th dose dependent rect. 17 15
152 177.72 radiation 20 720 < th dose dependent rect. 17 18
170 177.85 humidity 90 90 < th dose dependent rect. 15 23
175 177.91 radiation 10 720 < th dose dependent sin 11 NA
178 177.93 radiation 1 720 < th dose independent rect. 3 14
202 178.09 humidity 50 270 > th dose dependent rect. 9 8
230 178.32 humidity 60 270 > th dose independent rect. 9 13
249 178.45 humidity 90 30 < th dose independent rect. 6 15
266 178.49 radiation 1 720 < th dose dependent rect. 3 15
273 178.55 humidity 90 10 < th dose dependent rect. 15 23
278 178.59 humidity 60 270 < th dose independent rect. 13 23
283 178.60 humidity 60 270 > th dose independent rect. 20 23
296 178.64 humidity 50 90 > th dose dependent rect. 15 23
307 178.71 radiation 1 720 < th dose independent rect. 3 4
314 178.73 radiation 1 720 > th dose independent sin 3 NA
324 178.77 radiation 20 720 < th dose dependent rect. 2 9
325 178.77 radiation 40 720 < th dose dependent rect. 17 16
333 178.82 radiation 1 720 > th dose dependent rect. 15 18
347 178.89 humidity 50 90 > th dose dependent rect. 17 23
350 178.91 radiation 10 720 < th dose dependent rect. 17 15
370 178.99 humidity 50 30 > th dose dependent rect. 23 23
376 179.01 radiation 10 720 > th dose independent rect. 15 19
380 179.04 radiation 1 720 < th dose independent sin 3 NA
399 179.09 humidity 90 30 < th dose dependent rect. 22 23
409 179.18 humidity 90 30 < th dose dependent no NA NA
418 179.21 humidity 90 30 < th dose dependent rect. 11 23
440 179.32 humidity 90 10 < th dose dependent rect. 17 23
460 179.43 temperature 30 90 < th dose independent rect. 11 19
491 179.58 humidity 60 270 > th dose independent no NA NA
493 179.58 humidity 60 270 > th dose independent rect. 18 23
498 179.59 humidity 90 30 < th dose dependent rect. 9 23
509 179.63 radiation 1 720 > th dose independent rect. 5 13
534 179.69 radiation 1 720 < th dose independent rect. 3 16
602 179.96 humidity 60 270 < th dose independent rect. 8 10
626 180.03 humidity 60 270 < th dose independent no NA NA
725 180.08 radiation 1 720 > th dose dependent sin 12 NA
738 180.14 humidity 50 270 > th dose dependent rect. 9 12
769 180.22 radiation 1 720 < th dose dependent sin 2 NA
783 180.28 radiation 40 720 > th dose dependent rect. 8 1
810 180.33 radiation 10 720 < th dose independent rect. 17 18
841 180.43 humidity 60 270 > th dose independent rect. 24 23
864 180.51 radiation 1 720 < th dose dependent rect. 3 5
878 180.57 humidity 90 720 < th dose dependent sin 5 NA
898 180.64 radiation 1 720 < th dose independent rect. 17 20
906 180.67 humidity 60 270 < th dose independent rect. 11 23
911 180.69 radiation 10 270 < th dose dependent rect. 7 22
918 180.73 radiation 40 720 > th dose independent rect. 8 1
935 180.73 humidity 90 30 < th dose dependent rect. 19 23
937 180.74 humidity 80 10 < th dose independent rect. 17 17
946 180.77 humidity 60 270 < th dose independent sin 22 NA
957 180.80 humidity 50 720 > th dose dependent sin 4 NA
966 180.82 humidity 60 270 > th dose independent sin 0 NA
981 180.86 radiation 20 720 > th dose independent rect. 6 1