Os07g0457600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0457600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.91 | 0.305 | 2.98 | -0.301 | 0.0468 | 0.378 | 0.0336 | -3.4 | -0.00604 | 11.4 | 30 | 10 | -- | -- |
| 45.24 | 0.316 | 2.95 | -0.0273 | 0.0685 | 0.109 | -0.0543 | -- | 0.0232 | 11.8 | 31.2 | 6 | -- | -- |
| 42.92 | 0.305 | 2.98 | -0.298 | 0.0467 | 0.376 | -- | -3.39 | -0.00574 | 11.6 | 30.01 | 10 | -- | -- |
| 45.22 | 0.315 | 2.95 | -0.0308 | 0.0623 | 0.0904 | -- | -- | 0.0173 | 11.3 | 30.01 | 10 | -- | -- |
| 43.05 | 0.306 | 2.98 | -0.307 | -- | 0.396 | -- | -3.46 | -0.00618 | -- | 30.04 | 10 | -- | -- |
| 45.5 | 0.316 | 2.95 | -0.0195 | 0.0802 | -- | -0.0494 | -- | 0.0168 | 12.5 | -- | -- | -- | -- |
| 45.51 | 0.316 | 2.95 | -0.0215 | 0.0803 | -- | -- | -- | 0.0165 | 12.4 | -- | -- | -- | -- |
| 45.45 | 0.315 | 2.95 | -0.0338 | -- | 0.107 | -- | -- | 0.017 | -- | 30.1 | 8 | -- | -- |
| 45.24 | 0.315 | 2.95 | -- | 0.063 | 0.088 | -- | -- | 0.0207 | 11.3 | 30.01 | 10 | -- | -- |
| 45.91 | 0.317 | 2.95 | -0.0242 | -- | -- | -- | -- | 0.0152 | -- | -- | -- | -- | -- |
| 45.52 | 0.316 | 2.95 | -- | 0.0806 | -- | -- | -- | 0.0189 | 12.4 | -- | -- | -- | -- |
| 45.48 | 0.315 | 2.95 | -- | -- | 0.105 | -- | -- | 0.0207 | -- | 30.1 | 8 | -- | -- |
| 45.93 | 0.316 | 2.95 | -- | -- | -- | -- | -- | 0.0179 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.92 | temperature | 30.0 | 10 | < th | dose independent | rect. | 21 | 23 |
| 3 | 42.04 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 4 | 42.08 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 5 | 42.08 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 7 | 42.09 | wind | 3.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 10 | 42.10 | wind | 9.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 11 | 42.10 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 13 | 42.10 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 14 | 42.10 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 17 | 42.10 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 18 | 42.10 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 20 | 42.10 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 22 | 42.10 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 27 | 42.10 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 28 | 42.10 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 30 | 42.10 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 32 | 42.10 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 37 | 42.10 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 38 | 42.11 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 41 | 42.12 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 42 | 42.13 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 44 | 42.14 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 48 | 42.14 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 52 | 42.15 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 55 | 42.15 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 59 | 42.15 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 65 | 42.15 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 66 | 42.15 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 86 | 42.15 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 89 | 42.15 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 113 | 42.34 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 142 | 42.39 | temperature | 30.0 | 10 | > th | dose independent | rect. | 11 | 2 |
| 144 | 42.42 | temperature | 30.0 | 90 | > th | dose independent | rect. | 11 | 2 |
| 154 | 42.48 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 158 | 42.50 | temperature | 30.0 | 10 | > th | dose independent | sin | 6 | NA |
| 217 | 42.58 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 11 | 3 |
| 297 | 42.70 | temperature | 30.0 | 10 | > th | dose independent | rect. | 14 | 23 |
| 359 | 42.80 | temperature | 30.0 | 10 | > th | dose dependent | sin | 6 | NA |
| 455 | 42.91 | temperature | 30.0 | 10 | > th | dose independent | no | NA | NA |
| 573 | 43.03 | wind | 9.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 638 | 43.16 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 12 | 22 |
| 642 | 43.19 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 21 | 23 |
| 690 | 43.27 | temperature | 30.0 | 10 | < th | dose independent | sin | 3 | NA |
| 799 | 43.40 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 21 | 23 |
| 801 | 43.40 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 820 | 43.44 | temperature | 30.0 | 10 | < th | dose independent | no | NA | NA |
| 872 | 43.50 | wind | 1.0 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 877 | 43.51 | radiation | 40.0 | 10 | > th | dose dependent | sin | 12 | NA |
| 879 | 43.52 | radiation | 40.0 | 10 | > th | dose independent | sin | 12 | NA |
| 887 | 43.54 | wind | 1.0 | 10 | < th | dose independent | rect. | 9 | 1 |
| 907 | 43.56 | radiation | 40.0 | 30 | > th | dose independent | rect. | 12 | 22 |
| 919 | 43.57 | humidity | 70.0 | 720 | > th | dose independent | rect. | 21 | 12 |
| 940 | 43.61 | wind | 1.0 | 10 | < th | dose independent | rect. | 6 | 4 |
| 946 | 43.61 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 961 | 43.65 | temperature | 30.0 | 10 | < th | dose independent | rect. | 13 | 23 |