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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0457400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0417) R2 : 2.9e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0032 (0.0879) R2dN8 : 3.75e-06 R2N8 : 2.9e-06
σ : 0.786
deviance : 283.45
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
265.01 0.765 2.91 0.411 1.5 -2.22 8.23 -11.5 0.128 5.83 0.1664 750 -- --
274.5 0.772 3.03 0.181 0.253 -0.435 -0.0136 -- 0.00306 15.1 20.5 1215 -- --
276.2 0.78 3.04 0.185 0.309 -0.0929 -- 0.537 0.0262 18.9 0.6132 1011 -- --
272.82 0.769 3.06 0.17 0.233 -0.513 -- -- -0.0421 18.5 33.14 3180 -- --
272.07 0.768 3.05 0.302 -- -0.547 -- -1.48 -0.0308 -- 64.5 2096 -- --
277.02 0.78 3.04 0.209 0.275 -- 0.758 -- 0.0279 18.5 -- -- -- --
278.17 0.781 3.04 0.201 0.288 -- -- -- 0.0314 17.6 -- -- -- --
274.16 0.771 3.05 0.16 -- -0.589 -- -- -0.0674 -- 63.44 2077 -- --
273.65 0.77 3.05 -- 0.232 -0.502 -- -- -0.0544 17.8 57.81 3155 -- --
282.48 0.785 3.03 0.191 -- -- -- -- 0.0244 -- -- -- -- --
279.23 0.782 3.04 -- 0.285 -- -- -- 0.00904 17.6 -- -- -- --
274.85 0.772 3.06 -- -- -0.596 -- -- -0.0884 -- 62.4 2086 -- --
283.45 0.786 3.04 -- -- -- -- -- 0.0032 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 260.14 temperature 10.0 43200 > th dose independent rect. 14 6
3 260.67 precipitation 0.1 30 > th dose independent rect. 13 5
15 260.67 precipitation 0.1 30 > th dose dependent rect. 13 5
27 260.78 precipitation 0.1 10 > th dose independent rect. 17 1
55 260.78 precipitation 0.1 10 > th dose dependent rect. 17 1
85 261.93 radiation 1.0 720 < th dose dependent rect. 18 17
88 262.32 radiation 1.0 720 < th dose dependent sin 9 NA
94 262.51 temperature 10.0 43200 > th dose independent rect. 17 3
96 262.52 temperature 30.0 90 > th dose independent rect. 18 15
97 262.54 radiation 1.0 720 < th dose independent rect. 18 17
102 262.68 humidity 50.0 14400 > th dose independent rect. 18 2
103 262.68 temperature 15.0 1440 > th dose independent rect. 7 13
104 262.70 precipitation 0.1 270 > th dose dependent rect. 6 14
112 263.00 temperature 25.0 10 > th dose dependent rect. 1 6
124 263.28 radiation 1.0 720 > th dose independent rect. 18 16
125 263.29 temperature 20.0 4320 > th dose independent rect. 14 1
129 263.37 temperature 30.0 90 > th dose dependent rect. 18 16
137 263.49 wind 1.0 4320 > th dose independent rect. 2 1
138 263.53 temperature 15.0 4320 > th dose independent rect. 18 2
140 263.57 radiation 1.0 720 < th dose dependent rect. 3 8
145 263.70 radiation 1.0 720 < th dose independent sin 8 NA
158 264.05 radiation 1.0 720 > th dose independent sin 8 NA
164 264.12 temperature 30.0 90 < th dose dependent rect. 19 17
167 264.13 humidity 50.0 43200 > th dose independent rect. 2 2
168 264.13 temperature 15.0 4320 > th dose independent rect. 14 6
169 264.14 radiation 1.0 720 < th dose dependent rect. 3 14
173 264.18 atmosphere 1015.0 1440 < th dose independent rect. 17 2
183 264.36 precipitation 0.1 270 > th dose dependent sin 23 NA
184 264.36 temperature 20.0 90 < th dose dependent rect. 11 12
185 264.37 wind 1.0 4320 < th dose independent rect. 2 1
187 264.39 precipitation 0.1 270 > th dose independent rect. 8 10
190 264.40 humidity 90.0 30 > th dose independent rect. 11 8
197 264.45 radiation 1.0 720 < th dose dependent rect. 21 14
199 264.47 temperature 30.0 90 > th dose dependent rect. 8 1
216 264.52 wind 3.0 43200 < th dose independent rect. 24 1
219 264.54 temperature 30.0 90 > th dose independent rect. 8 1
234 264.55 wind 3.0 43200 > th dose independent rect. 24 1
241 264.60 precipitation 0.1 270 > th dose independent rect. 8 12
257 264.65 radiation 1.0 720 < th dose dependent rect. 1 10
271 264.70 radiation 40.0 90 < th dose dependent rect. 19 17
296 264.77 radiation 1.0 720 < th dose dependent rect. 5 6
300 264.79 radiation 1.0 720 > th dose independent rect. 4 6
311 264.79 temperature 30.0 10 < th dose dependent rect. 20 17
356 264.87 radiation 1.0 720 < th dose independent rect. 1 10
365 264.88 radiation 1.0 720 < th dose independent rect. 3 8
380 264.94 radiation 1.0 720 > th dose independent rect. 18 19
412 265.02 radiation 1.0 720 > th dose independent rect. 18 21
414 265.03 temperature 20.0 90 < th dose dependent rect. 7 16
415 265.04 temperature 15.0 1440 > th dose independent rect. 2 2
418 265.06 temperature 10.0 270 > th dose dependent rect. 22 10
432 265.15 radiation 40.0 90 < th dose independent rect. 19 17
447 265.27 radiation 1.0 720 < th dose dependent rect. 23 12
474 265.37 temperature 20.0 10 < th dose dependent rect. 11 12
479 265.40 wind 1.0 43200 > th dose dependent rect. 24 4
485 265.41 wind 9.0 43200 < th dose dependent rect. 24 4
489 265.43 temperature 30.0 90 < th dose dependent rect. 19 21
490 265.44 wind 3.0 90 > th dose independent rect. 12 7
499 265.49 temperature 15.0 4320 < th dose independent rect. 14 3
503 265.51 temperature 15.0 4320 < th dose dependent rect. 14 1
515 265.54 atmosphere 1015.0 1440 < th dose independent rect. 2 7
519 265.56 temperature 20.0 10 < th dose dependent rect. 6 17
520 265.57 wind 1.0 43200 > th dose dependent rect. 23 6
530 265.63 radiation 1.0 720 < th dose dependent rect. 21 20
531 265.64 atmosphere 1015.0 1440 < th dose independent rect. 2 2
535 265.65 radiation 20.0 270 < th dose independent rect. 18 16
538 265.66 radiation 40.0 720 > th dose dependent rect. 14 20
539 265.67 wind 7.0 43200 < th dose dependent rect. 23 6
544 265.69 radiation 1.0 720 < th dose independent rect. 23 12
557 265.74 radiation 1.0 720 < th dose independent rect. 19 12
560 265.75 temperature 20.0 4320 < th dose dependent rect. 16 1
566 265.76 humidity 90.0 30 > th dose dependent rect. 11 8
594 265.87 wind 5.0 43200 > th dose dependent rect. 8 2
597 265.88 wind 5.0 43200 < th dose dependent rect. 2 1
606 265.90 temperature 25.0 90 > th dose dependent rect. 1 1
618 265.94 humidity 90.0 270 > th dose dependent rect. 8 14
625 265.96 temperature 30.0 10 < th dose dependent rect. 19 21
637 265.99 temperature 20.0 90 < th dose independent rect. 21 1
645 266.01 temperature 15.0 4320 < th dose dependent rect. 14 9
657 266.02 radiation 1.0 720 > th dose independent rect. 18 23
680 266.06 wind 5.0 43200 < th dose independent rect. 7 7
691 266.07 temperature 20.0 10 < th dose dependent rect. 21 2
693 266.07 temperature 10.0 90 > th dose dependent rect. 23 21
703 266.08 wind 3.0 43200 > th dose dependent rect. 22 16
711 266.10 wind 5.0 43200 < th dose independent rect. 19 19
721 266.11 wind 5.0 43200 < th dose independent rect. 22 16
738 266.13 temperature 20.0 43200 < th dose independent rect. 20 1
741 266.13 precipitation 0.1 1440 < th dose independent rect. 20 7
745 266.13 precipitation 0.1 1440 < th dose dependent rect. 20 7
758 266.14 temperature 10.0 10 > th dose dependent rect. 1 19
761 266.15 wind 5.0 43200 > th dose independent rect. 7 7
762 266.15 temperature 10.0 43200 > th dose independent rect. 9 11
774 266.17 wind 3.0 43200 > th dose dependent rect. 20 13
783 266.19 wind 5.0 43200 > th dose independent rect. 19 19
784 266.19 temperature 20.0 10 < th dose dependent sin 20 NA
790 266.19 temperature 20.0 10 < th dose dependent rect. 4 19
806 266.22 precipitation 0.1 14400 < th dose independent rect. 23 1
808 266.22 precipitation 0.1 14400 < th dose dependent rect. 23 1
810 266.22 wind 3.0 43200 > th dose dependent rect. 22 13
852 266.25 humidity 90.0 270 > th dose independent rect. 8 14
853 266.25 wind 5.0 43200 > th dose independent rect. 22 16
867 266.27 temperature 20.0 270 < th dose dependent sin 22 NA
874 266.28 radiation 1.0 720 < th dose independent rect. 5 6
876 266.28 wind 9.0 43200 < th dose dependent rect. 2 1
880 266.29 wind 7.0 43200 < th dose independent rect. 7 3
885 266.30 wind 7.0 43200 > th dose independent rect. 8 2
888 266.30 wind 7.0 270 < th dose independent rect. 21 22
912 266.33 humidity 50.0 14400 > th dose independent rect. 2 7
928 266.35 temperature 15.0 4320 < th dose dependent sin 20 NA
936 266.36 wind 1.0 4320 < th dose dependent rect. 2 1
947 266.37 wind 3.0 43200 > th dose dependent sin 8 NA
950 266.37 humidity 70.0 43200 > th dose dependent rect. 24 12
952 266.38 temperature 20.0 43200 > th dose independent rect. 19 2
964 266.38 temperature 30.0 10 > th dose dependent rect. 16 19
972 266.40 temperature 15.0 270 > th dose independent rect. 21 22
976 266.41 wind 5.0 43200 > th dose independent rect. 10 4
979 266.41 temperature 20.0 43200 < th dose dependent rect. 20 1
985 266.42 wind 5.0 43200 < th dose independent rect. 10 4
1000 266.43 radiation 40.0 720 > th dose dependent rect. 8 2