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Os07g0457200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.19 (0.0346) R2 : 0.382
β1 : 1.51 (0.132) R2dD : 0.207 R2D : 0.288
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.28 (0.163) R2dE : 0.101 R2E : 0.162
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.124 (0.0767) R2dN8 : 0.00249 R2N8 : 0.00205
σ : 0.641
deviance : 189.17
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C
peak time of C : --
E
wheather : temperature
threshold : 8.964
memory length : 1090
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.31
open length of G : 20.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
154.79 0.585 6.25 1.03 1.49 1.99 -1.71 -5.54 -0.225 1.77 10.81 249 3.1 16.1
167.37 0.603 6.21 1.64 2.41 3.01 1.55 -- -0.109 2.91 1.487 479 3.03 14.8
156.99 0.584 6.22 1.22 1.38 1.91 -- -3.61 -0.166 1.96 13.27 229 3.14 16.3
176.05 0.618 6.18 1.58 2.53 3.09 -- -- -0.0758 2.87 0.4725 459 3.03 15.2
187.81 0.638 6.22 1.17 -- 0.689 -- -4.16 -0.154 -- 15.4 334 1.44 19.1
207.17 0.675 6.12 1.89 0.133 -- 1.23 -- 0.116 2.6 -- -- -- --
211.83 0.682 6.13 1.86 0.169 -- -- -- 0.11 23.8 -- -- -- --
189.17 0.641 6.19 1.51 -- 1.28 -- -- -0.124 -- 8.964 1090 1.31 20.9
232.52 0.71 6.23 -- 3.07 4.02 -- -- -0.301 3.05 1.273 558 1.67 16
213.64 0.683 6.13 1.86 -- -- -- -- 0.113 -- -- -- -- --
303.01 0.814 6.18 -- 0.194 -- -- -- -0.0967 0.384 -- -- -- --
210.28 0.675 6.28 -- -- 1.57 -- -- -0.564 -- 2.892 47520 1.48 24
305.38 0.816 6.17 -- -- -- -- -- -0.0943 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 155.13 temperature 10 270 > th dose dependent rect. 3 16
9 159.76 temperature 20 270 > th dose independent rect. 3 16
12 160.54 temperature 15 10 > th dose dependent rect. 4 16
18 160.97 temperature 15 10 > th dose dependent rect. 4 18
69 165.60 temperature 10 90 > th dose dependent rect. 3 22
71 165.88 temperature 25 720 < th dose dependent rect. 24 12
93 166.87 temperature 10 720 > th dose dependent rect. 3 8
108 167.43 temperature 30 90 < th dose dependent rect. 9 8
117 167.73 temperature 30 270 < th dose dependent rect. 7 8
152 168.79 temperature 25 720 < th dose dependent sin 6 NA
179 169.33 temperature 10 720 > th dose dependent rect. 23 16
205 169.79 temperature 15 720 > th dose dependent sin 6 NA
259 170.59 temperature 15 90 > th dose dependent rect. 3 8
316 171.20 temperature 25 270 < th dose dependent rect. 9 1
318 171.21 temperature 25 10 < th dose dependent sin 1 NA
352 171.55 temperature 20 90 > th dose independent rect. 3 8
365 171.64 temperature 20 10 > th dose independent rect. 4 16
433 172.31 temperature 20 720 > th dose independent rect. 3 8
443 172.41 temperature 20 270 < th dose dependent sin 2 NA
496 172.69 temperature 20 720 < th dose independent rect. 1 11
536 172.92 temperature 30 10 < th dose dependent rect. 9 5
635 173.43 temperature 20 720 < th dose dependent rect. 1 2
872 174.79 temperature 20 30 < th dose dependent rect. 2 16
879 174.82 wind 9 10 < th dose independent rect. 3 23
909 174.96 atmosphere 1015 720 < th dose independent rect. 23 16
952 175.13 temperature 30 270 < th dose dependent rect. 11 1
984 175.31 atmosphere 1015 720 < th dose independent rect. 3 8