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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0456900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : No apical meristem (NAM) protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0207) R2 : 0.00275
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0488 (0.0435) R2dN8 : 0.00355 R2N8 : 0.00275
σ : 0.389
deviance : 69.54
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.72 0.384 3.05 0.0179 0.125 -1.47 0.0631 -2.62 0.0597 9.86 9 26 -- --
66.98 0.381 3.04 0.00312 0.124 -0.765 0.116 -- 0.0625 10.2 9 28 -- --
66.73 0.38 3.05 0.0206 0.125 -1.49 -- -2.72 0.0597 9.67 8.998 25 -- --
67.02 0.381 3.04 0.00519 0.125 -0.764 -- -- 0.0613 9.69 8.991 28 -- --
67.66 0.383 3.06 0.0208 -- -1.5 -- -2.67 0.0603 -- 8.978 26 -- --
68.42 0.388 3.05 -0.0439 0.131 -- 0.0929 -- 0.0444 10.5 -- -- -- --
68.45 0.387 3.05 -0.0403 0.131 -- -- -- 0.0445 10.4 -- -- -- --
67.95 0.384 3.05 0.0056 -- -0.786 -- -- 0.062 -- 8.99 28 -- --
67.03 0.381 3.04 -- 0.125 -0.761 -- -- 0.0607 9.7 8.988 28 -- --
69.49 0.39 3.05 -0.0424 -- -- -- -- 0.0441 -- -- -- -- --
68.49 0.387 3.05 -- 0.131 -- -- -- 0.049 10.4 -- -- -- --
67.95 0.384 3.05 -- -- -0.783 -- -- 0.0613 -- 8.944 28 -- --
69.54 0.389 3.05 -- -- -- -- -- 0.0488 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.51 humidity 80.0 30 < th dose independent rect. 24 2
4 64.51 humidity 80.0 30 < th dose dependent rect. 24 2
21 64.86 humidity 80.0 1440 > th dose independent rect. 1 1
22 64.89 humidity 80.0 720 < th dose dependent rect. 24 2
24 64.90 humidity 80.0 720 < th dose independent rect. 1 1
30 64.91 wind 9.0 30 > th dose dependent rect. 21 15
39 65.07 wind 1.0 30 < th dose independent rect. 2 1
40 65.08 humidity 80.0 30 > th dose independent rect. 2 1
41 65.10 wind 3.0 30 < th dose dependent rect. 2 1
42 65.10 humidity 80.0 30 > th dose dependent rect. 2 1
44 65.14 temperature 20.0 30 > th dose independent rect. 2 1
45 65.14 wind 9.0 30 > th dose dependent rect. 11 1
53 65.15 temperature 20.0 30 > th dose dependent rect. 2 1
58 65.19 wind 9.0 30 > th dose dependent sin 7 NA
77 65.21 wind 1.0 10 < th dose independent rect. 8 4
94 65.27 humidity 60.0 270 < th dose dependent rect. 9 1
123 65.29 atmosphere 1005.0 30 > th dose dependent rect. 2 1
128 65.34 humidity 60.0 1440 > th dose independent rect. 4 5
130 65.35 humidity 60.0 270 < th dose independent rect. 8 1
184 65.37 wind 5.0 30 < th dose independent rect. 2 1
187 65.37 temperature 10.0 30 > th dose independent rect. 2 1
189 65.37 temperature 25.0 30 < th dose independent rect. 2 1
191 65.37 humidity 50.0 30 > th dose independent rect. 2 1
194 65.37 atmosphere 995.0 30 > th dose independent rect. 2 1
195 65.37 atmosphere 1010.0 30 < th dose independent rect. 2 1
197 65.37 radiation 1.0 30 < th dose independent rect. 2 1
202 65.37 precipitation 0.1 30 < th dose independent rect. 2 1
203 65.37 humidity 60.0 1440 > th dose independent rect. 7 2
204 65.37 temperature 10.0 30 > th dose independent rect. 3 23
205 65.37 atmosphere 995.0 30 > th dose dependent rect. 2 1
207 65.37 radiation 1.0 30 < th dose dependent rect. 2 1
212 65.37 precipitation 0.1 30 < th dose dependent rect. 2 1
216 65.40 humidity 60.0 90 < th dose independent rect. 18 15
266 65.43 atmosphere 1015.0 30 < th dose dependent rect. 2 1
267 65.43 humidity 60.0 90 < th dose dependent rect. 17 17
284 65.45 humidity 60.0 10 < th dose independent rect. 10 1
286 65.45 humidity 60.0 30 < th dose independent rect. 17 17
290 65.45 humidity 60.0 10 < th dose dependent rect. 10 1
296 65.46 atmosphere 1005.0 30 > th dose dependent rect. 16 1
341 65.48 wind 1.0 10 < th dose dependent rect. 9 1
415 65.50 atmosphere 1005.0 30 > th dose independent rect. 16 1
435 65.52 wind 1.0 10 < th dose independent rect. 9 1
461 65.54 temperature 30.0 30 < th dose independent rect. 16 1
529 65.58 wind 9.0 30 < th dose independent sin 7 NA
532 65.58 wind 9.0 30 > th dose independent rect. 21 15
539 65.59 humidity 50.0 30 > th dose independent rect. 16 1
554 65.61 humidity 60.0 1440 > th dose independent rect. 23 10
590 65.66 radiation 40.0 30 > th dose dependent sin 12 NA
598 65.69 temperature 30.0 30 < th dose dependent rect. 2 1
599 65.69 humidity 50.0 30 > th dose dependent rect. 16 1
606 65.71 wind 9.0 30 > th dose independent rect. 11 1
625 65.71 radiation 40.0 30 > th dose dependent rect. 13 21
626 65.72 humidity 60.0 1440 > th dose independent rect. 20 13
670 65.77 wind 5.0 30 > th dose dependent rect. 16 1
700 65.80 radiation 40.0 30 > th dose dependent rect. 9 1
802 65.90 wind 9.0 30 > th dose independent sin 7 NA
827 65.92 wind 5.0 10 > th dose independent rect. 16 1
849 65.95 wind 9.0 30 < th dose independent rect. 3 23
873 66.00 wind 1.0 30 > th dose independent rect. 2 1
874 66.00 radiation 10.0 10 < th dose independent rect. 16 1
904 66.05 radiation 20.0 270 > th dose dependent rect. 6 1
978 66.09 radiation 10.0 10 < th dose independent rect. 12 1
984 66.09 temperature 30.0 30 < th dose dependent rect. 16 1