Os07g0455100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os07g0455100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.34 | 0.456 | 7.38 | 1.86 | 2.13 | -1.66 | -0.00411 | 1.11 | 0.366 | 17.7 | 6.148 | 593 | -- | -- |
| 95.34 | 0.455 | 7.39 | 1.72 | 2.13 | -1.64 | 0.0218 | -- | 0.326 | 17.7 | 14.26 | 588 | -- | -- |
| 94.34 | 0.452 | 7.38 | 1.86 | 2.13 | -1.66 | -- | 1.11 | 0.366 | 17.7 | 6.153 | 593 | -- | -- |
| 95.27 | 0.455 | 7.4 | 1.67 | 2.13 | -1.64 | -- | -- | 0.312 | 17.7 | 14.17 | 596 | -- | -- |
| 239.35 | 0.721 | 7.31 | 1.93 | -- | -1.76 | -- | 1.06 | 0.398 | -- | -22.7 | 1277 | -- | -- |
| 127.21 | 0.529 | 7.45 | 1.28 | 1.76 | -- | -0.0711 | -- | 0.0669 | 17.3 | -- | -- | -- | -- |
| 127.22 | 0.528 | 7.45 | 1.28 | 1.76 | -- | -- | -- | 0.0666 | 17.3 | -- | -- | -- | -- |
| 239.44 | 0.721 | 7.35 | 1.74 | -- | -1.71 | -- | -- | 0.332 | -- | 9.109 | 1265 | -- | -- |
| 160.3 | 0.59 | 7.46 | -- | 1.95 | -0.873 | -- | -- | 0.0317 | 17.5 | 10.31 | 531 | -- | -- |
| 289.17 | 0.795 | 7.42 | 1.22 | -- | -- | -- | -- | 0.0227 | -- | -- | -- | -- | -- |
| 170.23 | 0.61 | 7.48 | -- | 1.74 | -- | -- | -- | -0.0757 | 17.3 | -- | -- | -- | -- |
| 303.49 | 0.811 | 7.44 | -- | -- | -0.784 | -- | -- | -0.0186 | -- | 23.96 | 1258 | -- | -- |
| 328.23 | 0.846 | 7.45 | -- | -- | -- | -- | -- | -0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 7 | 85.39 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 17 |
| 14 | 86.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 22 | 87.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 83 | 90.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 107 | 90.97 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 18 |
| 113 | 91.18 | temperature | 20 | 90 | > th | dose independent | rect. | 15 | 17 |
| 138 | 91.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 10 |
| 145 | 91.73 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 146 | 91.75 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 151 | 91.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 171 | 92.15 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 180 | 92.38 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 191 | 92.50 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 198 | 92.62 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 8 | 17 |
| 224 | 93.08 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 246 | 93.30 | temperature | 15 | 720 | > th | dose dependent | sin | 14 | NA |
| 252 | 93.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 15 |
| 254 | 93.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 19 |
| 262 | 93.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 265 | 93.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 291 | 93.75 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 323 | 94.01 | temperature | 30 | 30 | < th | dose dependent | rect. | 18 | 10 |
| 327 | 94.05 | temperature | 15 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 365 | 94.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 12 |
| 366 | 94.29 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 368 | 94.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 12 |
| 475 | 94.50 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 485 | 94.53 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 576 | 94.70 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 638 | 94.81 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 797 | 95.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 16 |