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Os07g0454700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Trafficking protein particle complex subunit 4 (Synbindin) (TRS23 homolog).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0176) R2 : 0.00377
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0488 (0.0371) R2dN8 : 0.00487 R2N8 : 0.00377
σ : 0.332
deviance : 50.66
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.29 0.241 10.3 0.171 0.567 -0.429 0.212 -0.457 0.0806 6.77 34.67 270 -- --
26.48 0.24 10.3 0.177 0.564 -0.398 0.238 -- 0.083 6.74 31.67 276 -- --
26.4 0.239 10.3 0.175 0.567 -0.422 -- -0.48 0.079 6.69 34.67 273 -- --
26.61 0.24 10.3 0.183 0.567 -0.386 -- -- 0.0797 6.7 31.49 277 -- --
34.58 0.274 10.3 0.284 -- -0.652 -- -0.0331 0.126 -- -0.01773 588 -- --
28.37 0.25 10.3 0.185 0.637 -- 0.162 -- 0.0578 6.09 -- -- -- --
28.43 0.25 10.3 0.187 0.638 -- -- -- 0.0571 6.05 -- -- -- --
34.48 0.273 10.3 0.232 -- -0.656 -- -- 0.127 -- -2.765 617 -- --
27.46 0.244 10.3 -- 0.575 -0.42 -- -- 0.0588 6.69 34.92 276 -- --
49.55 0.329 10.3 0.205 -- -- -- -- 0.0715 -- -- -- -- --
29.35 0.253 10.3 -- 0.641 -- -- -- 0.0363 6.03 -- -- -- --
35.9 0.279 10.3 -- -- -0.647 -- -- 0.101 -- -6.037 597 -- --
50.66 0.332 10.3 -- -- -- -- -- 0.0488 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.92 temperature 15.0 270 > th dose independent rect. 17 15
3 24.11 radiation 30.0 270 < th dose independent rect. 3 8
4 24.13 atmosphere 1015.0 270 < th dose dependent rect. 8 8
5 24.13 radiation 40.0 270 < th dose dependent rect. 3 8
8 24.26 temperature 30.0 90 < th dose independent rect. 5 10
14 24.30 humidity 90.0 30 < th dose independent rect. 18 15
22 24.46 temperature 10.0 90 > th dose dependent rect. 9 9
23 24.47 radiation 30.0 90 < th dose independent rect. 5 6
24 24.47 radiation 40.0 270 < th dose independent rect. 3 10
27 24.48 temperature 10.0 270 > th dose dependent rect. 7 9
28 24.50 radiation 40.0 270 < th dose independent rect. 3 19
31 24.55 atmosphere 1015.0 10 < th dose dependent rect. 10 8
36 24.58 radiation 40.0 270 < th dose independent rect. 3 12
40 24.59 radiation 20.0 270 < th dose independent rect. 17 15
44 24.62 humidity 70.0 90 > th dose independent rect. 5 6
46 24.63 humidity 90.0 270 < th dose independent rect. 8 9
48 24.63 radiation 40.0 90 < th dose independent rect. 5 18
52 24.66 radiation 40.0 90 < th dose independent rect. 5 10
64 24.69 precipitation 0.1 270 < th dose independent rect. 17 14
67 24.69 precipitation 0.1 270 < th dose dependent rect. 17 14
81 24.74 temperature 15.0 270 > th dose independent rect. 8 9
83 24.74 humidity 70.0 90 > th dose independent rect. 5 10
86 24.74 humidity 50.0 90 > th dose dependent rect. 5 10
87 24.75 temperature 30.0 270 < th dose independent rect. 3 10
98 24.81 humidity 70.0 90 > th dose independent rect. 5 8
106 24.85 radiation 40.0 90 < th dose independent rect. 5 8
111 24.86 humidity 60.0 90 > th dose dependent rect. 5 8
112 24.86 atmosphere 995.0 90 > th dose dependent rect. 5 16
120 24.87 radiation 40.0 270 < th dose dependent rect. 17 15
129 24.91 atmosphere 1000.0 270 > th dose independent rect. 22 5
131 24.91 humidity 50.0 270 > th dose dependent rect. 3 10
132 24.92 wind 9.0 270 < th dose independent rect. 8 9
145 24.95 atmosphere 995.0 10 > th dose dependent rect. 6 16
147 24.96 wind 1.0 270 > th dose independent rect. 8 9
161 24.99 temperature 30.0 90 < th dose dependent rect. 5 10
164 25.00 radiation 1.0 90 < th dose dependent sin 8 NA
165 25.00 temperature 30.0 90 < th dose dependent rect. 5 8
166 25.00 temperature 15.0 10 > th dose dependent rect. 9 9
172 25.01 temperature 30.0 270 < th dose independent rect. 3 8
180 25.02 temperature 30.0 270 < th dose dependent rect. 3 10
196 25.05 atmosphere 1015.0 270 < th dose independent rect. 8 9
197 25.05 precipitation 0.1 270 < th dose independent rect. 8 9
201 25.05 temperature 30.0 270 < th dose dependent rect. 3 8
202 25.05 precipitation 0.1 270 < th dose dependent rect. 8 9
204 25.06 wind 9.0 270 < th dose independent rect. 17 15
208 25.07 temperature 30.0 90 < th dose independent rect. 5 8
222 25.08 atmosphere 995.0 270 > th dose dependent rect. 22 5
231 25.10 radiation 1.0 90 < th dose independent sin 9 NA
236 25.10 radiation 40.0 10 < th dose independent rect. 6 18
246 25.11 temperature 15.0 270 > th dose independent rect. 14 9
256 25.13 radiation 1.0 90 > th dose independent sin 8 NA
259 25.13 atmosphere 995.0 270 > th dose independent rect. 17 15
272 25.15 temperature 15.0 1440 > th dose independent rect. 7 16
278 25.15 temperature 10.0 90 > th dose dependent rect. 9 20
280 25.16 radiation 1.0 90 < th dose independent rect. 23 7
281 25.16 humidity 50.0 270 > th dose independent rect. 17 15
288 25.16 radiation 1.0 90 < th dose dependent rect. 23 7
293 25.16 humidity 90.0 270 < th dose dependent rect. 17 14
298 25.18 temperature 30.0 90 < th dose independent rect. 5 6
303 25.18 humidity 50.0 270 > th dose dependent rect. 3 8
315 25.19 humidity 60.0 270 > th dose dependent rect. 21 6
324 25.20 precipitation 0.1 270 < th dose independent rect. 3 19
328 25.20 precipitation 0.1 270 < th dose dependent rect. 3 19
339 25.21 radiation 1.0 90 < th dose dependent rect. 23 16
349 25.22 temperature 10.0 270 > th dose dependent rect. 23 15
358 25.24 temperature 20.0 270 > th dose independent rect. 22 5
370 25.24 humidity 90.0 90 < th dose dependent rect. 19 12
406 25.28 radiation 1.0 270 > th dose independent rect. 8 9
409 25.28 temperature 15.0 10 > th dose independent rect. 19 15
414 25.29 humidity 70.0 270 > th dose independent rect. 3 7
417 25.29 precipitation 0.1 90 < th dose independent rect. 5 18
421 25.29 atmosphere 995.0 90 > th dose dependent rect. 5 10
422 25.29 precipitation 0.1 90 < th dose dependent rect. 5 18
430 25.30 temperature 30.0 90 < th dose independent rect. 5 18
431 25.30 humidity 90.0 10 < th dose dependent rect. 20 11
444 25.31 temperature 15.0 90 > th dose dependent rect. 24 17
447 25.32 wind 1.0 270 > th dose independent rect. 9 18
449 25.32 radiation 10.0 10 < th dose dependent sin 9 NA
458 25.32 radiation 40.0 270 < th dose dependent rect. 3 19
460 25.33 radiation 1.0 90 > th dose independent rect. 4 5
476 25.33 temperature 15.0 270 > th dose independent rect. 3 19
488 25.34 humidity 70.0 270 > th dose independent rect. 3 10
495 25.34 humidity 90.0 270 < th dose dependent rect. 17 7
519 25.36 radiation 40.0 10 < th dose independent rect. 6 16
531 25.37 radiation 10.0 270 < th dose independent rect. 5 3
559 25.38 humidity 90.0 30 < th dose dependent rect. 19 14
577 25.40 radiation 40.0 270 < th dose independent sin 9 NA
578 25.40 humidity 80.0 270 > th dose independent rect. 22 5
579 25.40 precipitation 0.1 270 < th dose independent rect. 3 6
584 25.40 temperature 30.0 30 < th dose independent rect. 6 16
589 25.40 precipitation 0.1 270 < th dose dependent rect. 3 6
600 25.41 humidity 90.0 30 < th dose independent sin 10 NA
628 25.42 wind 9.0 270 < th dose independent rect. 9 18
669 25.44 humidity 60.0 10 > th dose independent rect. 6 16
690 25.45 humidity 90.0 720 < th dose dependent rect. 19 3
726 25.47 atmosphere 1005.0 270 > th dose independent rect. 5 2
752 25.48 wind 7.0 270 < th dose independent rect. 3 6
783 25.50 wind 9.0 270 < th dose independent rect. 22 5
784 25.50 temperature 10.0 270 > th dose independent rect. 22 5
785 25.50 temperature 30.0 270 < th dose independent rect. 22 5
786 25.50 humidity 50.0 270 > th dose independent rect. 22 5
790 25.50 radiation 1.0 270 < th dose independent rect. 22 5
796 25.50 temperature 10.0 270 > th dose independent rect. 3 6
798 25.50 humidity 50.0 270 > th dose independent rect. 3 6
799 25.50 atmosphere 995.0 270 > th dose independent rect. 3 6
800 25.50 atmosphere 1015.0 270 < th dose independent rect. 3 6
803 25.50 atmosphere 995.0 270 > th dose independent rect. 8 9
807 25.50 temperature 10.0 270 > th dose independent rect. 9 18
814 25.50 radiation 1.0 270 < th dose dependent rect. 22 5
826 25.50 radiation 40.0 270 > th dose dependent rect. 14 21
828 25.51 precipitation 0.1 270 < th dose independent rect. 22 5
834 25.51 atmosphere 995.0 90 > th dose independent rect. 5 18
838 25.51 precipitation 0.1 270 < th dose dependent rect. 22 5
859 25.52 temperature 10.0 90 > th dose independent rect. 5 18
861 25.52 humidity 90.0 30 < th dose independent rect. 14 19
886 25.53 temperature 20.0 10 > th dose independent rect. 24 6
902 25.53 wind 9.0 270 < th dose dependent rect. 8 9
920 25.54 atmosphere 1000.0 10 > th dose independent rect. 22 8
996 25.58 wind 1.0 270 > th dose independent rect. 22 5
997 25.58 wind 9.0 270 < th dose independent rect. 21 7
998 25.58 temperature 10.0 270 > th dose independent rect. 21 7
999 25.58 temperature 30.0 270 < th dose independent rect. 21 7
1000 25.58 humidity 50.0 270 > th dose independent rect. 21 7