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Os07g0454200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Hydroxyproline-rich glycoprotein gas29p precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.56 (0.0184) R2 : 0.103
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.281 (0.0387) R2dN8 : 0.133 R2N8 : 0.103
σ : 0.346
deviance : 55.04
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.05 0.319 9.57 0.00754 0.271 0.301 0.997 0.44 0.232 23.6 21.32 62 -- --
47.01 0.319 9.58 -0.106 0.265 0.292 0.746 -- 0.229 23.2 21 47 -- --
48.01 0.323 9.57 0.0242 0.114 0.323 -- 0.618 0.199 23.1 21.9 859 -- --
49.11 0.326 9.58 -0.125 0.235 0.303 -- -- 0.218 23.3 20.6 113 -- --
48.73 0.325 9.56 0.0835 -- 0.346 -- 0.843 0.228 -- 21.9 862 -- --
50.79 0.334 9.57 -0.0277 0.187 -- 0.705 -- 0.276 22.8 -- -- -- --
52.87 0.341 9.57 -0.056 0.184 -- -- -- 0.274 22.6 -- -- -- --
50.77 0.332 9.59 -0.167 -- 0.318 -- -- 0.176 -- 21.8 783 -- --
49.59 0.328 9.58 -- 0.233 0.283 -- -- 0.233 23.4 20.58 113 -- --
54.97 0.346 9.56 -0.0525 -- -- -- -- 0.275 -- -- -- -- --
52.96 0.34 9.57 -- 0.184 -- -- -- 0.28 22.6 -- -- -- --
51.39 0.334 9.58 -- -- 0.278 -- -- 0.201 -- 22 780 -- --
55.04 0.346 9.56 -- -- -- -- -- 0.281 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.82 temperature 20.0 10 > th dose independent rect. 18 11
5 43.35 temperature 20.0 10 > th dose independent rect. 7 22
8 43.67 temperature 10.0 270 > th dose dependent rect. 21 14
9 43.68 temperature 10.0 10 > th dose dependent rect. 7 22
11 43.73 temperature 20.0 90 > th dose independent rect. 7 21
13 43.89 temperature 10.0 270 > th dose dependent rect. 17 9
14 43.90 temperature 15.0 270 > th dose dependent rect. 18 17
17 43.93 temperature 20.0 270 > th dose independent rect. 5 21
24 44.07 temperature 15.0 270 > th dose dependent rect. 17 19
56 44.49 wind 9.0 14400 > th dose dependent rect. 12 1
72 44.64 temperature 30.0 270 < th dose dependent rect. 23 7
86 44.75 temperature 10.0 10 > th dose dependent rect. 18 11
92 44.79 radiation 1.0 10 < th dose dependent sin 12 NA
93 44.79 humidity 80.0 14400 < th dose dependent rect. 6 1
102 44.84 temperature 15.0 10 > th dose dependent rect. 23 13
135 44.98 temperature 30.0 90 < th dose dependent rect. 15 16
144 45.02 temperature 20.0 270 > th dose independent rect. 18 17
148 45.04 humidity 80.0 14400 < th dose independent rect. 5 2
149 45.04 temperature 20.0 90 > th dose independent rect. 18 19
152 45.06 humidity 80.0 14400 > th dose independent rect. 5 2
184 45.16 temperature 30.0 90 < th dose dependent sin 8 NA
189 45.18 temperature 25.0 270 < th dose independent sin 9 NA
197 45.20 precipitation 0.1 14400 > th dose dependent rect. 17 1
198 45.21 radiation 1.0 10 > th dose independent sin 12 NA
209 45.24 temperature 25.0 270 < th dose independent rect. 23 7
211 45.24 temperature 30.0 270 < th dose dependent rect. 1 5
217 45.25 temperature 20.0 10 > th dose independent rect. 18 20
221 45.26 temperature 25.0 270 < th dose independent rect. 1 5
222 45.26 temperature 20.0 10 > th dose independent rect. 18 18
243 45.33 radiation 1.0 10 < th dose independent sin 12 NA
266 45.38 precipitation 0.1 14400 > th dose independent rect. 17 1
267 45.39 radiation 1.0 10 > th dose independent rect. 16 15
294 45.46 temperature 25.0 90 < th dose dependent rect. 1 22
322 45.52 temperature 20.0 10 > th dose independent rect. 21 8
326 45.53 temperature 30.0 270 < th dose dependent sin 10 NA
332 45.54 temperature 15.0 90 > th dose dependent sin 7 NA
351 45.58 temperature 30.0 90 < th dose dependent rect. 3 4
380 45.62 wind 9.0 14400 > th dose independent rect. 10 3
381 45.62 wind 9.0 14400 > th dose independent rect. 5 8
390 45.63 wind 9.0 14400 > th dose independent rect. 12 1
391 45.63 atmosphere 1000.0 10 > th dose independent rect. 5 13
393 45.63 temperature 30.0 10 < th dose dependent rect. 14 18
395 45.64 temperature 20.0 10 > th dose independent rect. 23 13
414 45.67 radiation 1.0 10 > th dose independent rect. 14 17
466 45.74 wind 9.0 14400 < th dose independent rect. 5 8
484 45.76 wind 9.0 14400 > th dose dependent rect. 10 3
510 45.79 wind 9.0 14400 > th dose dependent rect. 5 8
536 45.82 precipitation 0.1 14400 < th dose independent rect. 17 1
542 45.82 precipitation 0.1 14400 < th dose dependent rect. 17 1
562 45.86 radiation 1.0 30 > th dose independent rect. 12 19
579 45.88 temperature 25.0 270 > th dose independent sin 9 NA
580 45.88 wind 9.0 14400 < th dose independent rect. 10 3
589 45.88 radiation 1.0 10 < th dose dependent rect. 18 22
595 45.89 temperature 10.0 270 > th dose dependent rect. 6 6
596 45.89 radiation 10.0 10 < th dose dependent rect. 18 11
603 45.90 wind 9.0 10 < th dose independent rect. 18 11
605 45.90 wind 7.0 10 < th dose independent rect. 7 22
617 45.91 temperature 10.0 10 > th dose independent rect. 18 11
618 45.91 humidity 50.0 10 > th dose independent rect. 18 11
619 45.91 radiation 20.0 10 < th dose independent rect. 18 11
622 45.91 temperature 10.0 10 > th dose independent rect. 5 13
624 45.91 atmosphere 1015.0 10 < th dose independent rect. 5 13
632 45.91 radiation 1.0 10 < th dose dependent rect. 18 20
635 45.92 precipitation 0.1 10 < th dose independent rect. 5 13
638 45.92 precipitation 0.1 10 < th dose dependent rect. 5 13
644 45.93 atmosphere 995.0 10 > th dose independent rect. 18 11
655 45.94 radiation 1.0 10 < th dose independent rect. 18 11
671 45.96 wind 7.0 270 < th dose independent rect. 6 6
679 45.97 wind 3.0 14400 < th dose independent rect. 1 6
682 45.97 wind 9.0 270 < th dose dependent rect. 6 6
694 45.98 wind 9.0 14400 < th dose independent rect. 12 1
696 45.98 precipitation 0.1 270 < th dose independent rect. 2 14
702 45.98 precipitation 0.1 270 < th dose dependent rect. 2 14
717 45.99 temperature 15.0 30 > th dose dependent rect. 7 5
725 46.00 temperature 20.0 90 > th dose independent rect. 21 7
735 46.01 wind 3.0 14400 < th dose independent rect. 1 3
737 46.01 temperature 25.0 270 < th dose independent rect. 11 19
789 46.05 wind 3.0 14400 > th dose independent rect. 1 6
821 46.06 radiation 1.0 10 < th dose dependent rect. 18 18
845 46.08 radiation 10.0 14400 < th dose dependent rect. 19 9
846 46.08 humidity 50.0 10 > th dose dependent rect. 18 11
858 46.09 temperature 30.0 270 < th dose dependent rect. 3 1
864 46.10 temperature 25.0 10 < th dose independent rect. 4 2
870 46.10 radiation 1.0 10 < th dose dependent rect. 18 14
882 46.11 wind 5.0 90 < th dose independent rect. 7 20
897 46.12 wind 3.0 14400 < th dose independent rect. 5 1
918 46.13 wind 3.0 14400 > th dose independent rect. 1 3
924 46.13 wind 9.0 270 < th dose dependent rect. 7 4
934 46.14 wind 9.0 14400 > th dose independent rect. 10 1
951 46.15 wind 5.0 270 < th dose independent rect. 7 4
952 46.15 wind 3.0 14400 < th dose independent rect. 22 9
974 46.16 temperature 20.0 270 < th dose independent rect. 15 14
975 46.16 wind 1.0 270 > th dose independent rect. 12 18
983 46.17 wind 3.0 14400 > th dose independent rect. 5 1
989 46.17 precipitation 0.1 270 < th dose independent rect. 12 18
990 46.17 radiation 1.0 10 < th dose independent rect. 18 20
998 46.17 precipitation 0.1 270 < th dose dependent rect. 12 18