Os07g0454100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0454100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.71 | 0.167 | 12.1 | 0.849 | 0.679 | -0.36 | -0.401 | 1.5 | 0.32 | 5.87 | 19.53 | 1429 | -- | -- |
| 14.69 | 0.179 | 12.2 | 0.521 | 0.669 | -0.411 | -0.363 | -- | 0.253 | 5.91 | 9.619 | 9127 | -- | -- |
| 13.05 | 0.168 | 12.1 | 0.856 | 0.653 | -0.371 | -- | 1.56 | 0.325 | 5.95 | 19.81 | 1652 | -- | -- |
| 15 | 0.18 | 12.2 | 0.519 | 0.668 | -0.411 | -- | -- | 0.255 | 5.91 | 9.785 | 9125 | -- | -- |
| 20.98 | 0.213 | 12.1 | 0.865 | -- | -0.984 | -- | 2.73 | 0.342 | -- | 24.08 | 393 | -- | -- |
| 17.37 | 0.195 | 12.2 | 0.3 | 0.67 | -- | -0.358 | -- | 0.13 | 5.97 | -- | -- | -- | -- |
| 17.68 | 0.197 | 12.2 | 0.297 | 0.668 | -- | -- | -- | 0.132 | 5.98 | -- | -- | -- | -- |
| 23.96 | 0.228 | 12.2 | 0.443 | -- | -0.761 | -- | -- | 0.215 | -- | 24.5 | 390 | -- | -- |
| 18.9 | 0.202 | 12.2 | -- | 0.63 | -0.209 | -- | -- | 0.0737 | 5.8 | 28.7 | 795 | -- | -- |
| 40.81 | 0.298 | 12.2 | 0.317 | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
| 20.01 | 0.209 | 12.2 | -- | 0.672 | -- | -- | -- | 0.0985 | 5.95 | -- | -- | -- | -- |
| 28.99 | 0.251 | 12.2 | -- | -- | -0.698 | -- | -- | 0.154 | -- | 24.8 | 379 | -- | -- |
| 43.45 | 0.308 | 12.2 | -- | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 2 | 12.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 13 | 12.22 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 26 | 12.31 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 30 | 12.32 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 35 | 12.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 7 |
| 39 | 12.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 83 | 12.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 94 | 12.44 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 169 | 12.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 536 | 12.69 | temperature | 30 | 1440 | < th | dose dependent | sin | 18 | NA |
| 625 | 12.72 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 657 | 12.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 666 | 12.73 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 667 | 12.73 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 669 | 12.73 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 884 | 12.78 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |