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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0452100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, clan GH-D family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.00917) R2 : 0.0156
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0519 (0.0193) R2dN8 : 0.0202 R2N8 : 0.0156
σ : 0.173
deviance : 13.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
12.21 0.163 3.1 -0.18 0.103 -0.688 0.0505 2.99 -0.0365 8.46 1000 10 -- --
12.34 0.165 3.06 0.0198 0.101 -0.16 0.037 -- -0.0367 8.32 1000 10 -- --
12.22 0.164 3.1 -0.176 0.103 -0.681 -- 2.95 -0.0366 8.3 1000 13 -- --
12.35 0.165 3.06 0.0207 0.101 -0.161 -- -- -0.0368 8.2 1000 13 -- --
12.81 0.168 3.1 -0.153 -- -0.624 -- 2.62 -0.0354 -- 1000 22 -- --
13.05 0.169 3.07 0.0482 0.101 -- 0.0484 -- -0.0473 8.52 -- -- -- --
13.05 0.169 3.07 0.0495 0.101 -- -- -- -0.0474 8.35 -- -- -- --
12.91 0.168 3.07 0.0214 -- -0.161 -- -- -0.0356 -- 1000 22 -- --
12.36 0.165 3.06 -- 0.101 -0.164 -- -- -0.0388 8.18 1000 18 -- --
13.62 0.172 3.07 0.0502 -- -- -- -- -0.0464 -- -- -- -- --
13.12 0.169 3.07 -- 0.101 -- -- -- -0.053 8.32 -- -- -- --
12.92 0.168 3.07 -- -- -0.165 -- -- -0.0376 -- 1000 22 -- --
13.69 0.173 3.07 -- -- -- -- -- -0.0519 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 11.84 humidity 80 14400 < th dose dependent rect. 2 7
4 11.86 humidity 80 14400 < th dose dependent rect. 21 13
7 11.89 atmosphere 1000 720 > th dose independent rect. 21 14
12 11.93 atmosphere 1000 10 < th dose independent rect. 7 20
29 11.98 humidity 80 90 < th dose independent rect. 2 1
30 11.98 humidity 90 10 < th dose independent rect. 3 1
35 11.98 atmosphere 1000 10 > th dose independent rect. 21 23
36 11.98 humidity 80 90 < th dose dependent rect. 2 1
37 11.98 humidity 90 10 < th dose dependent rect. 3 1
43 11.99 humidity 70 14400 > th dose independent rect. 8 2
62 12.00 humidity 70 14400 < th dose independent rect. 8 2
80 12.02 atmosphere 1000 720 > th dose independent rect. 23 10
115 12.05 atmosphere 1000 90 > th dose independent rect. 3 23
119 12.05 atmosphere 1000 10 < th dose dependent rect. 7 20
142 12.08 humidity 70 4320 > th dose independent rect. 10 1
151 12.09 temperature 30 1440 > th dose independent rect. 15 20
152 12.09 temperature 30 1440 < th dose independent rect. 15 20
160 12.11 atmosphere 995 720 > th dose independent rect. 23 16
162 12.11 wind 5 14400 < th dose dependent rect. 10 2
166 12.12 humidity 70 4320 < th dose independent rect. 10 1
167 12.12 wind 3 14400 > th dose independent rect. 10 2
171 12.12 humidity 80 14400 < th dose dependent sin 8 NA
176 12.13 temperature 30 4320 < th dose independent rect. 3 6
187 12.14 wind 1 14400 < th dose independent rect. 4 3
191 12.14 atmosphere 1000 90 > th dose independent rect. 11 22
202 12.15 atmosphere 1000 10 > th dose independent rect. 8 23
204 12.15 wind 1 14400 < th dose dependent rect. 2 1
233 12.16 wind 1 14400 < th dose dependent rect. 6 1
234 12.16 temperature 30 1440 > th dose dependent rect. 15 1
235 12.16 humidity 80 4320 > th dose dependent rect. 6 4
243 12.17 wind 3 14400 > th dose independent rect. 19 1
245 12.17 wind 3 14400 < th dose independent rect. 10 2
246 12.17 temperature 30 1440 > th dose independent rect. 15 2
248 12.17 wind 1 14400 > th dose independent rect. 4 3
250 12.17 atmosphere 1000 720 > th dose independent rect. 3 8
257 12.17 atmosphere 1000 10 > th dose independent rect. 3 23
259 12.17 humidity 80 4320 > th dose dependent rect. 8 1
283 12.18 humidity 70 4320 > th dose dependent rect. 5 6
293 12.19 temperature 30 1440 < th dose independent rect. 15 2
299 12.19 humidity 70 4320 > th dose independent rect. 8 9
330 12.19 atmosphere 1000 10 > th dose independent rect. 10 23
333 12.19 wind 9 14400 > th dose dependent rect. 13 1
336 12.19 humidity 50 4320 > th dose dependent rect. 11 2
337 12.19 wind 1 14400 < th dose dependent rect. 4 4
344 12.19 humidity 50 4320 > th dose dependent rect. 23 16
350 12.20 humidity 70 4320 > th dose independent sin 1 NA
369 12.20 humidity 70 4320 > th dose independent rect. 10 8
397 12.20 wind 1 14400 > th dose dependent rect. 11 1
403 12.20 wind 1 14400 < th dose dependent rect. 2 6
408 12.20 humidity 50 4320 > th dose dependent rect. 3 12
411 12.20 humidity 50 4320 > th dose dependent rect. 1 14
423 12.21 temperature 30 1440 < th dose independent sin 11 NA
426 12.21 atmosphere 1000 10 > th dose independent no NA NA
428 12.21 atmosphere 1000 10 < th dose independent no NA NA
429 12.21 humidity 70 4320 > th dose independent rect. 16 1
431 12.21 atmosphere 1000 1440 > th dose independent rect. 22 1
432 12.21 atmosphere 1000 1440 < th dose independent rect. 21 2
454 12.21 humidity 70 4320 < th dose independent rect. 8 9
470 12.21 temperature 30 4320 < th dose independent rect. 20 13
509 12.21 atmosphere 1000 10 < th dose independent rect. 22 21
516 12.21 atmosphere 1000 10 < th dose independent rect. 1 23
520 12.21 atmosphere 1000 10 < th dose independent rect. 13 23
521 12.21 atmosphere 1000 10 < th dose independent rect. 17 23
525 12.21 atmosphere 1000 10 < th dose independent rect. 23 23
526 12.21 humidity 50 4320 > th dose dependent sin 4 NA
528 12.21 humidity 50 14400 > th dose dependent rect. 8 1
534 12.21 humidity 80 4320 < th dose dependent rect. 11 2
538 12.21 wind 3 14400 > th dose dependent rect. 10 5
572 12.22 wind 1 14400 > th dose independent rect. 1 2
578 12.22 wind 5 14400 < th dose independent rect. 11 4
607 12.22 temperature 30 1440 < th dose independent rect. 15 14
633 12.22 humidity 70 4320 > th dose independent rect. 14 22
644 12.22 atmosphere 1000 10 < th dose independent rect. 9 23
646 12.22 atmosphere 1000 30 < th dose independent rect. 11 23
648 12.22 atmosphere 1000 10 < th dose independent rect. 15 23
698 12.22 humidity 90 4320 < th dose dependent rect. 23 17
713 12.23 humidity 70 4320 > th dose independent no NA NA
714 12.23 humidity 70 4320 < th dose independent sin 1 NA
718 12.23 wind 5 4320 < th dose independent rect. 14 1
719 12.23 wind 3 14400 < th dose independent rect. 19 1
732 12.23 temperature 30 1440 < th dose independent rect. 15 7
739 12.23 temperature 30 1440 > th dose independent rect. 9 8
743 12.23 temperature 30 1440 < th dose independent rect. 8 9
750 12.23 atmosphere 995 720 > th dose independent rect. 11 10
848 12.23 humidity 70 4320 > th dose independent rect. 16 21
888 12.23 humidity 70 4320 > th dose independent rect. 10 23
897 12.23 atmosphere 1000 90 > th dose independent rect. 13 23
940 12.23 humidity 90 4320 < th dose dependent rect. 6 10
970 12.24 temperature 30 1440 > th dose independent sin 12 NA
971 12.24 temperature 30 1440 < th dose independent no NA NA
978 12.24 humidity 70 4320 < th dose independent rect. 16 1