Os07g0446900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0446900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.47 | 0.353 | 12.3 | -0.753 | 0.768 | -0.96 | -0.639 | -3.99 | 0.166 | 1.79 | 11.83 | 70 | -- | -- |
| 65.83 | 0.381 | 12.3 | -0.182 | 0.788 | -0.984 | 0.344 | -- | 0.319 | 2.09 | 11.83 | 70 | -- | -- |
| 57.63 | 0.354 | 12.3 | -0.659 | 0.781 | -0.93 | -- | -3.39 | 0.183 | 1.75 | 11.25 | 70 | -- | -- |
| 66.17 | 0.379 | 12.3 | -0.179 | 0.792 | -1 | -- | -- | 0.319 | 1.88 | 12.67 | 63 | -- | -- |
| 80.13 | 0.419 | 12.3 | -0.329 | -- | -1.49 | -- | -1.76 | 0.37 | -- | 21.1 | 19 | -- | -- |
| 75.08 | 0.406 | 12.3 | -0.368 | 1.07 | -- | 0.478 | -- | 0.181 | 2.15 | -- | -- | -- | -- |
| 75.94 | 0.408 | 12.3 | -0.382 | 1.07 | -- | -- | -- | 0.179 | 2.14 | -- | -- | -- | -- |
| 81.15 | 0.42 | 12.2 | -0.0694 | -- | -1.59 | -- | -- | 0.418 | -- | 23.16 | 5 | -- | -- |
| 66.93 | 0.381 | 12.3 | -- | 0.765 | -1.09 | -- | -- | 0.35 | 1.84 | 12.75 | 63 | -- | -- |
| 144.19 | 0.561 | 12.3 | -0.337 | -- | -- | -- | -- | 0.204 | -- | -- | -- | -- | -- |
| 79.78 | 0.418 | 12.3 | -- | 1.06 | -- | -- | -- | 0.221 | 2.13 | -- | -- | -- | -- |
| 81.25 | 0.42 | 12.2 | -- | -- | -1.61 | -- | -- | 0.43 | -- | 23.1 | 7 | -- | -- |
| 147.19 | 0.566 | 12.3 | -- | -- | -- | -- | -- | 0.242 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 2 | 55.18 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 3 | 55.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 4 | 55.50 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 14 | 55.95 | temperature | 15 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 22 | 56.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 40 | 56.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 45 | 56.53 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 58 | 56.65 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 73 | 56.83 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 81 | 56.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 87 | 56.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 96 | 57.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 113 | 57.24 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 126 | 57.32 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 128 | 57.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 146 | 57.50 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 148 | 57.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 159 | 57.59 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 160 | 57.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 166 | 57.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 187 | 57.79 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 192 | 57.81 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 234 | 58.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 308 | 58.48 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 321 | 58.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 358 | 58.77 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 375 | 58.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 380 | 58.92 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 390 | 58.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 421 | 59.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 504 | 59.37 | temperature | 20 | 90 | > th | dose dependent | sin | 0 | NA |
| 517 | 59.41 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 531 | 59.46 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 532 | 59.46 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 21 |
| 533 | 59.46 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 544 | 59.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 549 | 59.50 | temperature | 25 | 270 | > th | dose dependent | sin | 9 | NA |
| 567 | 59.56 | temperature | 20 | 10 | > th | dose dependent | sin | 23 | NA |
| 573 | 59.57 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 583 | 59.60 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 591 | 59.63 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 646 | 59.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 669 | 59.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 688 | 59.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 6 |
| 703 | 59.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 710 | 59.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 12 |
| 717 | 59.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 8 |
| 727 | 59.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 840 | 60.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 902 | 60.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 21 |