Os07g0440700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0440700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.78 | 0.229 | 3.14 | 0.165 | 0.129 | 0.213 | 0.0364 | 0.899 | -0.048 | 7.98 | 91.72 | 5944 | -- | -- |
| 24.91 | 0.232 | 3.14 | 0.124 | 0.145 | 0.266 | 0.0172 | -- | -0.0674 | 7.93 | 96.85 | 6638 | -- | -- |
| 23.78 | 0.227 | 3.14 | 0.166 | 0.129 | 0.213 | -- | 0.897 | -0.0479 | 7.86 | 91.99 | 5934 | -- | -- |
| 24.84 | 0.232 | 3.14 | 0.101 | 0.155 | 0.253 | -- | -- | -0.0776 | 7.55 | 102.8 | 4820 | -- | -- |
| 24.67 | 0.231 | 3.14 | 0.165 | -- | 0.214 | -- | 0.897 | -0.0469 | -- | 91.38 | 5883 | -- | -- |
| 25.68 | 0.238 | 3.13 | 0.0854 | 0.126 | -- | 0.0236 | -- | -0.0182 | 7.96 | -- | -- | -- | -- |
| 25.68 | 0.237 | 3.13 | 0.0859 | 0.126 | -- | -- | -- | -0.0183 | 7.87 | -- | -- | -- | -- |
| 25.75 | 0.236 | 3.14 | 0.114 | -- | 0.219 | -- | -- | -0.0601 | -- | 93 | 7168 | -- | -- |
| 25.11 | 0.233 | 3.14 | -- | 0.155 | 0.244 | -- | -- | -0.0838 | 7.43 | 97.26 | 4782 | -- | -- |
| 26.54 | 0.241 | 3.13 | 0.0873 | -- | -- | -- | -- | -0.0166 | -- | -- | -- | -- | -- |
| 25.87 | 0.238 | 3.13 | -- | 0.127 | -- | -- | -- | -0.0278 | 7.82 | -- | -- | -- | -- |
| 26.06 | 0.238 | 3.14 | -- | -- | 0.222 | -- | -- | -0.0723 | -- | 89 | 5749 | -- | -- |
| 26.74 | 0.241 | 3.13 | -- | -- | -- | -- | -- | -0.0262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.45 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 4 | 22.56 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 11 | 23.12 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 12 | 23.13 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 14 | 23.14 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 1 |
| 16 | 23.20 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 2 |
| 17 | 23.22 | wind | 3.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 22 | 23.28 | wind | 5.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 37 | 23.32 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 38 | 23.32 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 41 | 23.32 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 45 | 23.32 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 54 | 23.32 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 55 | 23.32 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 75 | 23.32 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 88 | 23.34 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 92 | 23.35 | humidity | 90.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 99 | 23.35 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 107 | 23.36 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 109 | 23.36 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 110 | 23.36 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 115 | 23.36 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 117 | 23.36 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 122 | 23.36 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 123 | 23.36 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 125 | 23.36 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 130 | 23.36 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 135 | 23.36 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 137 | 23.37 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 140 | 23.38 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 141 | 23.39 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 160 | 23.43 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 161 | 23.43 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 165 | 23.43 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 237 | 23.56 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 243 | 23.62 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 250 | 23.68 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 251 | 23.69 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 252 | 23.69 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 8 | 3 |
| 253 | 23.69 | humidity | 80.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 254 | 23.70 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 255 | 23.70 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 288 | 23.73 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 24 | 10 |
| 289 | 23.73 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 21 | 13 |
| 302 | 23.75 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 303 | 23.75 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 5 | 6 |
| 313 | 23.76 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 7 | 6 |
| 315 | 23.76 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 317 | 23.76 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 383 | 23.81 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 448 | 23.84 | humidity | 70.0 | 4320 | > th | dose independent | sin | 4 | NA |
| 517 | 23.86 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 3 | 12 |
| 526 | 23.87 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 8 |
| 546 | 23.87 | humidity | 50.0 | 4320 | > th | dose dependent | sin | 4 | NA |
| 561 | 23.87 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 605 | 23.88 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 629 | 23.89 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 651 | 23.89 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 679 | 23.89 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 23 | 16 |
| 696 | 23.90 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 727 | 23.91 | humidity | 70.0 | 4320 | < th | dose independent | sin | 4 | NA |
| 729 | 23.91 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 759 | 23.91 | humidity | 90.0 | 4320 | < th | dose dependent | sin | 4 | NA |
| 892 | 23.94 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 954 | 23.96 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 11 | 16 |
| 977 | 23.96 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 11 | 16 |