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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0440400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0452) R2 : 0.00433
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.134 (0.0952) R2dN8 : 0.00559 R2N8 : 0.00433
σ : 0.852
deviance : 333.05
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
312.83 0.831 2.98 0.173 0.102 0.517 0.474 3.83 -0.0472 18.8 0.1377 304 -- --
321.03 0.834 3.01 0.0966 0.13 1.05 0.207 -- -0.0478 19.4 0.5001 304 -- --
313.17 0.824 2.98 0.2 0.0894 0.473 -- 4.36 -0.0544 18.8 8.786e-07 251 -- --
320.75 0.834 3.02 0.1 0.124 1.03 -- -- -0.0375 18.6 0.2999 304 -- --
313.54 0.825 2.98 0.205 -- 0.411 -- 4.37 -0.0586 -- 0.002302 251 -- --
330.68 0.853 3.03 0.251 0.0694 -- 0.35 -- -0.106 7.14 -- -- -- --
331.01 0.852 3.03 0.259 0.0701 -- -- -- -0.106 7.23 -- -- -- --
321.43 0.835 3.01 0.12 -- 0.926 -- -- -0.0441 -- 0.3 304 -- --
320.98 0.834 3.02 -- 0.132 1.07 -- -- -0.0461 18.1 0.3 304 -- --
331.27 0.85 3.03 0.26 -- -- -- -- -0.105 -- -- -- -- --
332.77 0.853 3.03 -- 0.0728 -- -- -- -0.135 7 -- -- -- --
321.74 0.835 3.02 -- -- 0.966 -- -- -0.0564 -- 0.3 304 -- --
333.05 0.852 3.03 -- -- -- -- -- -0.134 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 300.23 wind 1.0 270 < th dose independent rect. 18 1
2 300.23 wind 1.0 270 < th dose dependent rect. 18 1
5 304.72 wind 1.0 90 < th dose dependent rect. 4 18
7 309.91 wind 1.0 10 < th dose independent rect. 21 1
11 309.91 wind 1.0 10 < th dose dependent rect. 21 1
15 310.03 wind 1.0 90 < th dose dependent rect. 21 1
25 310.35 wind 1.0 10 < th dose dependent rect. 13 9
33 310.51 wind 1.0 90 < th dose independent rect. 21 1
54 310.96 wind 1.0 90 < th dose independent rect. 16 6
71 311.62 wind 1.0 10 < th dose independent rect. 14 8
75 311.69 wind 1.0 90 < th dose dependent rect. 4 4
79 311.85 wind 1.0 1440 > th dose independent rect. 15 2
88 312.14 wind 1.0 90 < th dose dependent rect. 4 7
91 312.35 wind 1.0 270 < th dose dependent rect. 4 1
125 314.59 wind 1.0 270 < th dose independent rect. 4 1
135 314.89 wind 1.0 270 < th dose dependent rect. 24 5
139 315.27 wind 3.0 1440 < th dose dependent rect. 16 1
142 315.47 wind 1.0 270 < th dose dependent rect. 24 9
143 315.49 wind 7.0 30 > th dose independent rect. 16 2
149 315.89 atmosphere 1005.0 30 > th dose dependent rect. 16 2
152 316.02 wind 1.0 270 < th dose dependent rect. 24 11
159 316.25 humidity 50.0 1440 < th dose dependent rect. 15 1
160 316.27 wind 1.0 90 < th dose independent rect. 4 18
162 316.28 humidity 60.0 720 < th dose independent rect. 10 1
166 316.37 wind 1.0 720 < th dose dependent rect. 21 1
168 316.42 humidity 60.0 720 < th dose dependent rect. 11 1
175 316.86 wind 3.0 1440 < th dose dependent rect. 15 5
176 316.90 wind 3.0 1440 < th dose independent rect. 16 1
197 317.43 wind 3.0 1440 < th dose independent rect. 15 4
203 317.54 humidity 90.0 720 < th dose dependent rect. 11 1
218 317.75 wind 1.0 720 < th dose dependent rect. 21 8
228 317.86 wind 1.0 270 < th dose dependent rect. 21 12
232 317.92 wind 3.0 1440 > th dose independent rect. 15 4
234 318.02 atmosphere 1005.0 10 > th dose dependent rect. 16 7
241 318.11 wind 1.0 270 < th dose dependent sin 8 NA
243 318.12 wind 1.0 270 < th dose dependent rect. 16 17
247 318.14 humidity 60.0 720 < th dose dependent rect. 18 18
252 318.19 humidity 60.0 720 < th dose independent rect. 19 17
257 318.23 humidity 60.0 720 > th dose independent rect. 3 8
262 318.24 wind 1.0 270 < th dose dependent rect. 24 17
265 318.28 wind 1.0 270 < th dose dependent rect. 18 15
283 318.38 humidity 50.0 720 > th dose independent rect. 22 16
287 318.40 wind 7.0 4320 < th dose independent rect. 24 3
309 318.52 atmosphere 1000.0 30 > th dose independent rect. 17 23
319 318.61 wind 3.0 1440 < th dose dependent rect. 18 2
322 318.62 wind 5.0 30 > th dose dependent rect. 16 2
351 318.68 radiation 40.0 10 < th dose independent rect. 11 12
359 318.71 radiation 10.0 90 > th dose independent rect. 16 1
378 318.73 radiation 10.0 4320 < th dose independent rect. 12 3
389 318.75 wind 1.0 720 < th dose dependent rect. 15 14
393 318.78 radiation 10.0 90 > th dose dependent rect. 16 1
417 318.83 atmosphere 1005.0 30 > th dose independent rect. 16 1
418 318.84 temperature 10.0 1440 > th dose independent rect. 17 1
422 318.84 radiation 30.0 1440 < th dose independent rect. 17 1
428 318.84 temperature 10.0 1440 > th dose independent rect. 18 23
431 318.84 atmosphere 995.0 30 > th dose dependent rect. 16 1
436 318.85 radiation 20.0 30 < th dose independent rect. 16 1
437 318.86 temperature 20.0 30 > th dose independent rect. 16 1
438 318.86 atmosphere 995.0 30 > th dose independent rect. 16 1
440 318.86 humidity 50.0 1440 < th dose dependent rect. 15 21
442 318.87 temperature 30.0 30 < th dose independent rect. 16 1
444 318.88 wind 7.0 30 < th dose independent rect. 16 1
445 318.88 humidity 60.0 30 > th dose independent rect. 16 1
446 318.88 humidity 80.0 30 < th dose independent rect. 16 1
449 318.88 temperature 10.0 30 > th dose dependent rect. 16 1
458 318.90 wind 1.0 30 > th dose independent rect. 16 1
460 318.90 temperature 10.0 30 > th dose independent rect. 16 1
463 318.90 atmosphere 1010.0 30 < th dose independent rect. 16 1
467 318.90 precipitation 0.1 30 < th dose independent rect. 16 1
470 318.90 temperature 10.0 30 > th dose independent rect. 17 23
471 318.90 precipitation 0.1 30 < th dose dependent rect. 16 1
493 318.92 wind 9.0 30 < th dose dependent rect. 16 1
494 318.92 radiation 40.0 30 < th dose dependent rect. 16 1
501 318.93 humidity 90.0 30 < th dose dependent rect. 16 1
503 318.94 wind 9.0 43200 < th dose independent rect. 24 3
504 318.94 wind 1.0 30 > th dose dependent rect. 16 1
508 318.95 humidity 50.0 30 > th dose dependent rect. 16 1
533 318.99 humidity 60.0 1440 > th dose independent rect. 10 1
541 319.00 atmosphere 1015.0 30 < th dose dependent rect. 16 1
652 319.26 radiation 10.0 4320 < th dose dependent rect. 13 3
659 319.28 wind 1.0 90 < th dose independent rect. 4 3
696 319.33 humidity 90.0 720 > th dose dependent rect. 24 1
750 319.42 wind 1.0 270 < th dose dependent rect. 7 22
767 319.52 humidity 60.0 720 < th dose dependent sin 8 NA
792 319.63 precipitation 0.1 30 < th dose independent rect. 17 23
796 319.63 precipitation 0.1 30 < th dose dependent rect. 17 23
809 319.69 humidity 90.0 720 > th dose dependent rect. 24 3
811 319.70 temperature 30.0 30 < th dose dependent rect. 16 1
837 319.80 wind 1.0 720 < th dose independent rect. 21 1
838 319.80 humidity 50.0 1440 < th dose independent rect. 10 6
840 319.80 wind 1.0 720 > th dose independent rect. 21 8
863 319.84 wind 1.0 270 < th dose dependent rect. 21 20
900 319.97 wind 1.0 720 > th dose independent rect. 21 13
903 319.98 humidity 50.0 1440 < th dose independent rect. 13 3
908 319.99 wind 5.0 4320 > th dose dependent rect. 24 3
914 320.01 humidity 50.0 1440 > th dose independent rect. 10 6
919 320.02 humidity 50.0 1440 > th dose independent rect. 24 16
925 320.04 humidity 50.0 1440 > th dose independent rect. 7 9
926 320.04 humidity 50.0 1440 > th dose independent rect. 5 11
933 320.05 humidity 50.0 1440 > th dose independent rect. 19 21
964 320.11 wind 1.0 4320 > th dose dependent rect. 15 3
970 320.13 wind 9.0 4320 < th dose dependent rect. 15 3
987 320.17 wind 5.0 4320 > th dose independent rect. 24 3