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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0438900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.0512) R2 : 0.0821
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.96 (0.181) R2dE : 0.0577 R2E : 0.0618
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.3 (0.109) R2dN8 : 0.0203 R2N8 : 0.0244
σ : 0.962
deviance : 424.23
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1000
memory length : 11
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
408.4 0.941 3.6 -1.79 0.173 -6.13 0.0853 29.4 -0.284 1.12 1000 10 -- --
420.7 0.963 3.25 0.17 0.206 -0.945 0.181 -- -0.286 1.08 1000 10 -- --
408.41 0.948 3.6 -1.8 0.173 -6.14 -- 29.4 -0.284 0.784 1000 13 -- --
420.8 0.962 3.25 0.165 0.206 -0.942 -- -- -0.286 0.6 1000 11 -- --
410.26 0.943 3.6 -1.82 -- -6.23 -- 30 -0.281 -- 1000 43 -- --
445.15 0.989 3.26 0.336 0.184 -- 0.0755 -- -0.349 0.655 -- -- -- --
445.17 0.988 3.26 0.334 0.184 -- -- -- -0.349 0.408 -- -- -- --
423.46 0.963 3.25 0.174 -- -0.931 -- -- -0.283 -- 1000 11 -- --
421.5 0.961 3.25 -- 0.209 -0.97 -- -- -0.302 0.641 1000 11 -- --
447.29 0.988 3.26 0.34 -- -- -- -- -0.346 -- -- -- -- --
448.11 0.99 3.27 -- 0.189 -- -- -- -0.386 0.499 -- -- -- --
424.23 0.962 3.25 -- -- -0.96 -- -- -0.3 -- 1000 11 -- --
450.34 0.991 3.27 -- -- -- -- -- -0.384 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 404.39 atmosphere 1000 10 < th dose independent rect. 21 21
9 405.50 wind 1 4320 < th dose independent rect. 4 1
11 405.59 atmosphere 1000 10 < th dose independent rect. 5 22
17 405.84 wind 1 4320 < th dose dependent rect. 4 1
21 406.11 atmosphere 1000 10 < th dose independent rect. 21 19
43 408.01 atmosphere 1000 10 < th dose independent rect. 8 23
44 408.04 wind 1 4320 > th dose independent rect. 4 1
58 408.34 atmosphere 1000 10 < th dose independent rect. 13 23
60 408.36 atmosphere 1000 10 < th dose independent rect. 1 23
64 408.39 atmosphere 1000 10 < th dose independent rect. 17 23
65 408.40 atmosphere 1000 10 > th dose independent no NA NA
67 408.40 atmosphere 1000 10 < th dose independent no NA NA
73 408.45 atmosphere 1000 10 < th dose independent rect. 23 23
77 408.56 atmosphere 1000 30 < th dose independent rect. 15 23
78 408.57 temperature 30 4320 < th dose independent rect. 2 8
82 408.62 atmosphere 1000 30 < th dose independent rect. 11 23
84 408.66 temperature 30 4320 < th dose independent rect. 9 1
86 408.70 temperature 30 4320 > th dose independent rect. 8 2
137 409.16 temperature 30 4320 < th dose independent rect. 19 15
165 409.46 atmosphere 1000 90 < th dose dependent rect. 20 21
171 409.54 atmosphere 1000 90 < th dose dependent rect. 21 18
184 409.73 temperature 30 4320 > th dose dependent rect. 8 5
230 410.01 temperature 30 4320 > th dose dependent sin 8 NA
231 410.02 temperature 30 4320 > th dose dependent rect. 12 1
259 410.12 atmosphere 1000 10 < th dose dependent rect. 21 19
354 410.84 temperature 30 4320 > th dose independent sin 9 NA
361 410.87 atmosphere 1010 30 < th dose dependent rect. 5 22
407 411.27 atmosphere 1000 10 < th dose dependent rect. 21 17
456 411.45 temperature 30 4320 < th dose independent sin 9 NA
537 412.23 atmosphere 1000 10 < th dose independent rect. 8 19
612 412.66 atmosphere 1000 90 < th dose dependent rect. 21 14
652 412.87 temperature 30 4320 > th dose dependent no NA NA
815 413.05 atmosphere 1000 10 < th dose dependent sin 6 NA
848 413.29 atmosphere 1000 1440 < th dose dependent rect. 23 3
902 413.66 atmosphere 1000 1440 < th dose dependent rect. 1 1
904 413.66 atmosphere 1000 1440 < th dose dependent rect. 21 5
993 413.98 temperature 25 4320 > th dose dependent rect. 23 8