Os07g0438700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os07g0438700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.65 | 0.565 | 6.55 | -1.93 | 0.69 | 0.994 | 0.128 | -1.83 | -0.201 | 7.35 | 68.86 | 1341 | -- | -- |
| 147.82 | 0.566 | 6.54 | -1.87 | 0.714 | 0.806 | 0.141 | -- | -0.267 | 7.51 | 72.8 | 1275 | -- | -- |
| 144.69 | 0.56 | 6.55 | -1.93 | 0.691 | 0.997 | -- | -1.84 | -0.202 | 7.38 | 68.89 | 1336 | -- | -- |
| 147.84 | 0.566 | 6.55 | -1.85 | 0.698 | 0.806 | -- | -- | -0.272 | 7.57 | 74 | 1275 | -- | -- |
| 169.94 | 0.607 | 6.57 | -1.92 | -- | 1 | -- | -1.81 | -0.18 | -- | 68.96 | 1367 | -- | -- |
| 162.69 | 0.598 | 6.56 | -1.7 | 0.702 | -- | 0.224 | -- | -0.338 | 6.89 | -- | -- | -- | -- |
| 162.81 | 0.598 | 6.56 | -1.7 | 0.703 | -- | -- | -- | -0.338 | 6.93 | -- | -- | -- | -- |
| 173.27 | 0.613 | 6.56 | -1.83 | -- | 0.793 | -- | -- | -0.259 | -- | 74 | 1349 | -- | -- |
| 230.31 | 0.707 | 6.53 | -- | 0.714 | 0.7 | -- | -- | -0.194 | 7.77 | 92 | 2597 | -- | -- |
| 188.74 | 0.642 | 6.57 | -1.68 | -- | -- | -- | -- | -0.325 | -- | -- | -- | -- | -- |
| 238.64 | 0.723 | 6.52 | -- | 0.684 | -- | -- | -- | -0.15 | 7.09 | -- | -- | -- | -- |
| 203.47 | 0.664 | 6.45 | -- | -- | 1.43 | -- | -- | -0.0156 | -- | 68.45 | 30074 | -- | -- |
| 263.32 | 0.757 | 6.53 | -- | -- | -- | -- | -- | -0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.65 | radiation | 40 | 1440 | < th | dose dependent | rect. | 24 | 6 |
| 2 | 138.75 | radiation | 40 | 1440 | < th | dose dependent | rect. | 2 | 4 |
| 7 | 139.31 | radiation | 40 | 1440 | < th | dose dependent | rect. | 22 | 8 |
| 24 | 140.05 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 2 |
| 35 | 140.11 | radiation | 30 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 56 | 141.43 | radiation | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 58 | 141.88 | radiation | 30 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 63 | 142.20 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 98 | 142.91 | humidity | 70 | 1440 | < th | dose dependent | sin | 9 | NA |
| 113 | 143.10 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 144 | 143.32 | humidity | 60 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 148 | 143.48 | radiation | 40 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 154 | 143.57 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 156 | 143.63 | radiation | 40 | 4320 | < th | dose independent | rect. | 24 | 9 |
| 157 | 143.67 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 16 |
| 159 | 143.71 | humidity | 70 | 1440 | < th | dose dependent | rect. | 6 | 7 |
| 170 | 143.72 | radiation | 40 | 4320 | < th | dose independent | rect. | 2 | 7 |
| 171 | 143.74 | humidity | 60 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 176 | 143.83 | radiation | 40 | 4320 | < th | dose independent | rect. | 16 | 17 |
| 179 | 143.85 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 188 | 143.96 | radiation | 40 | 1440 | > th | dose dependent | rect. | 14 | 21 |
| 191 | 143.99 | radiation | 40 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 198 | 144.09 | humidity | 60 | 1440 | > th | dose independent | sin | 5 | NA |
| 218 | 144.39 | radiation | 40 | 1440 | < th | dose independent | rect. | 14 | 19 |
| 229 | 144.48 | humidity | 70 | 1440 | < th | dose independent | sin | 10 | NA |
| 234 | 144.50 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 241 | 144.60 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 276 | 144.70 | humidity | 70 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 284 | 144.74 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 18 |
| 289 | 144.75 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 16 |
| 299 | 144.76 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 309 | 144.77 | humidity | 60 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 311 | 144.77 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 13 |
| 319 | 144.79 | humidity | 60 | 1440 | > th | dose independent | rect. | 22 | 15 |
| 321 | 144.80 | humidity | 60 | 1440 | < th | dose independent | sin | 5 | NA |
| 326 | 144.81 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 11 |
| 339 | 144.83 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 341 | 144.83 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 16 |
| 353 | 144.86 | humidity | 60 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 394 | 144.98 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 403 | 144.99 | humidity | 60 | 1440 | > th | dose independent | no | NA | NA |
| 408 | 144.99 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 20 |
| 414 | 144.99 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 415 | 144.99 | humidity | 60 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 424 | 145.00 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 15 |
| 428 | 145.00 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 17 |
| 540 | 145.13 | humidity | 70 | 1440 | < th | dose dependent | rect. | 6 | 13 |
| 565 | 145.15 | radiation | 40 | 4320 | > th | dose independent | rect. | 15 | 18 |
| 607 | 145.25 | radiation | 40 | 14400 | > th | dose dependent | rect. | 14 | 19 |
| 628 | 145.28 | humidity | 70 | 1440 | < th | dose dependent | no | NA | NA |
| 686 | 145.29 | humidity | 60 | 1440 | < th | dose independent | rect. | 8 | 10 |
| 744 | 145.35 | humidity | 70 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 749 | 145.39 | humidity | 60 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 826 | 145.55 | humidity | 60 | 1440 | < th | dose independent | no | NA | NA |
| 910 | 145.56 | radiation | 40 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 995 | 145.67 | radiation | 40 | 1440 | > th | dose dependent | sin | 12 | NA |