Os07g0436600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os07g0436600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.74 | 0.476 | 6.29 | 1.3 | 0.716 | -1.65 | -0.29 | -2.76 | -0.0076 | 20.7 | 28.12 | 224 | -- | -- |
| 112.16 | 0.493 | 6.35 | 0.832 | 0.715 | -1.65 | -0.53 | -- | -0.116 | 21 | 30.31 | 179 | -- | -- |
| 102.95 | 0.473 | 6.3 | 1.29 | 0.723 | -1.64 | -- | -2.66 | -0.0177 | 20.8 | 27.82 | 213 | -- | -- |
| 112.21 | 0.493 | 6.35 | 0.829 | 0.779 | -1.65 | -- | -- | -0.103 | 21.1 | 30.24 | 148 | -- | -- |
| 123.29 | 0.517 | 6.27 | 1.34 | -- | -1.76 | -- | -2.85 | 0.0346 | -- | 29.8 | 393 | -- | -- |
| 147.49 | 0.569 | 6.28 | 1.24 | 0.979 | -- | -0.0478 | -- | 0.21 | 18.9 | -- | -- | -- | -- |
| 147.49 | 0.569 | 6.28 | 1.24 | 0.979 | -- | -- | -- | 0.21 | 18.9 | -- | -- | -- | -- |
| 130.6 | 0.532 | 6.34 | 0.743 | -- | -2.02 | -- | -- | -0.164 | -- | 31.01 | 434 | -- | -- |
| 129 | 0.529 | 6.38 | -- | 0.731 | -1.84 | -- | -- | -0.222 | 21.6 | 30.17 | 177 | -- | -- |
| 197.82 | 0.657 | 6.26 | 1.22 | -- | -- | -- | -- | 0.192 | -- | -- | -- | -- | -- |
| 187.77 | 0.641 | 6.31 | -- | 0.965 | -- | -- | -- | 0.0724 | 19 | -- | -- | -- | -- |
| 143.75 | 0.558 | 6.37 | -- | -- | -2.26 | -- | -- | -0.305 | -- | 30.4 | 457 | -- | -- |
| 236.8 | 0.718 | 6.29 | -- | -- | -- | -- | -- | 0.0569 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.31 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 9 | 102.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 13 | 102.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 23 |
| 16 | 102.73 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 18 | 102.84 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 31 | 103.07 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 35 | 103.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 39 | 103.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 43 | 103.49 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 47 | 103.68 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 11 |
| 68 | 104.23 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 69 | 104.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 10 |
| 72 | 104.35 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 102 | 104.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 17 |
| 130 | 105.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 144 | 105.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 154 | 105.45 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 170 | 105.59 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 176 | 105.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 179 | 105.64 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 202 | 105.78 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 236 | 105.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 258 | 106.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 267 | 106.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 277 | 106.14 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 348 | 106.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 20 |
| 386 | 106.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 9 |
| 414 | 106.68 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 450 | 106.83 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 458 | 106.86 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 504 | 106.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 14 |
| 525 | 107.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 594 | 107.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 20 |
| 680 | 107.39 | temperature | 20 | 4320 | < th | dose independent | sin | 18 | NA |
| 741 | 107.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 799 | 107.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 800 | 107.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 870 | 107.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 895 | 107.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 946 | 107.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 23 |