Os07g0435900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SRA-YDG domain containing protein.
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Os07g0435900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SRA-YDG domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.66 | 0.238 | 9.68 | 1.26 | 0.246 | -0.827 | -0.232 | 0.971 | 0.118 | 5.81 | 19.01 | 1606 | -- | -- |
| 26.42 | 0.239 | 9.71 | 1.04 | 0.27 | -0.927 | -0.163 | -- | 0.0534 | 4.42 | 15 | 2340 | -- | -- |
| 25.79 | 0.237 | 9.68 | 1.26 | 0.246 | -0.827 | -- | 0.971 | 0.119 | 5.72 | 19 | 1606 | -- | -- |
| 26.49 | 0.24 | 9.71 | 1.04 | 0.267 | -0.93 | -- | -- | 0.0543 | 4.34 | 14.91 | 2337 | -- | -- |
| 27.9 | 0.246 | 9.67 | 1.34 | -- | -0.86 | -- | 1.23 | 0.147 | -- | 20 | 1864 | -- | -- |
| 43.18 | 0.308 | 9.75 | 0.695 | 0.257 | -- | -0.251 | -- | -0.137 | 6.01 | -- | -- | -- | -- |
| 43.33 | 0.308 | 9.75 | 0.693 | 0.256 | -- | -- | -- | -0.136 | 5.94 | -- | -- | -- | -- |
| 28.94 | 0.251 | 9.71 | 1.03 | -- | -0.93 | -- | -- | 0.0614 | -- | 16.71 | 1896 | -- | -- |
| 48.51 | 0.326 | 9.75 | -- | 0.219 | -0.664 | -- | -- | -0.119 | 9.94 | 21.64 | 1547 | -- | -- |
| 46.72 | 0.319 | 9.76 | 0.701 | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
| 55.99 | 0.35 | 9.77 | -- | 0.266 | -- | -- | -- | -0.213 | 5.82 | -- | -- | -- | -- |
| 51.19 | 0.334 | 9.76 | -- | -- | -0.577 | -- | -- | -0.13 | -- | 21.64 | 1547 | -- | -- |
| 59.67 | 0.361 | 9.77 | -- | -- | -- | -- | -- | -0.208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 2 | 24.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 3 | 24.94 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 6 | 24.99 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 12 | 25.00 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 29 | 25.19 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 51 | 25.22 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 66 | 25.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 18 |
| 78 | 25.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 81 | 25.60 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 87 | 25.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 3 |
| 97 | 25.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 103 | 25.66 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 107 | 25.67 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 12 |
| 184 | 25.82 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 17 |
| 276 | 25.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 19 |
| 283 | 25.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 336 | 25.98 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 354 | 25.99 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 424 | 26.05 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 446 | 26.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 451 | 26.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 472 | 26.08 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 534 | 26.12 | temperature | 20 | 1440 | > th | dose dependent | sin | 6 | NA |
| 602 | 26.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 648 | 26.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 6 |
| 690 | 26.21 | radiation | 1 | 14400 | < th | dose independent | sin | 16 | NA |
| 719 | 26.22 | radiation | 1 | 14400 | < th | dose dependent | sin | 14 | NA |
| 798 | 26.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 799 | 26.25 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 863 | 26.27 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 911 | 26.28 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 19 |
| 977 | 26.31 | radiation | 1 | 14400 | < th | dose independent | rect. | 10 | 9 |