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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0434200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0428) R2 : 0.172
β1 : 0.108 (0.158) R2dD : 0.000891 R2D : 0.00113
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.94 (0.337) R2dE : 0.0619 R2E : 0.0846
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.36 (0.897) R2dD*E : 0.0677 R2D*E : 0.0873
γ1 : -0.239 (0.0917) R2dN8 : 0.0166 R2N8 : 0.0174
σ : 0.801
deviance : 296.08
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.1
memory length : 35
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.59
open length of G : 0.321

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
295.16 0.807 2.96 0.111 0.133 1.98 0.0736 5.39 -0.236 18.7 20.03 30 2.67 0.837
317.52 0.83 2.96 0.203 0.136 2.31 -0.598 -- -0.215 18.4 20.01 25 2.54 1.38
295.16 0.8 2.96 0.111 0.133 1.97 -- 5.38 -0.236 18.9 19.91 25 3.42 0.53
318.39 0.831 2.96 0.21 0.135 2.32 -- -- -0.217 19 19.95 21 3.31 0.528
296.08 0.801 2.96 0.108 -- 1.94 -- 5.36 -0.239 -- 20.1 35 3.59 0.321
348.44 0.875 2.96 0.222 0.0246 -- -0.737 -- -0.253 18.1 -- -- -- --
349.24 0.875 2.97 0.226 0.0945 -- -- -- -0.257 23.2 -- -- -- --
319.33 0.832 2.96 0.208 -- 2.27 -- -- -0.22 -- 19.95 26 3.28 0.587
319.55 0.833 2.96 -- 0.133 2.33 -- -- -0.24 19 19.99 26 3.33 0.551
349.8 0.874 2.96 0.228 -- -- -- -- -0.256 -- -- -- -- --
350.59 0.876 2.97 -- 0.0968 -- -- -- -0.282 23.4 -- -- -- --
320.47 0.834 2.96 -- -- 2.28 -- -- -0.243 -- 19.99 29 3.23 0.639
351.17 0.875 2.97 -- -- -- -- -- -0.282 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 295.17 temperature 20.0 30 < th dose independent rect. 3 1
12 300.74 temperature 25.0 90 < th dose dependent rect. 2 1
27 313.22 temperature 20.0 30 < th dose independent rect. 3 12
36 314.23 wind 1.0 10 > th dose dependent rect. 2 2
37 314.45 wind 1.0 10 < th dose independent rect. 17 5
39 314.70 temperature 20.0 10 < th dose independent rect. 3 15
61 315.66 wind 1.0 10 < th dose independent rect. 13 9
69 316.23 wind 3.0 90 > th dose independent rect. 2 1
70 316.45 wind 1.0 90 > th dose dependent rect. 2 1
73 316.67 wind 3.0 4320 > th dose dependent rect. 24 1
76 317.04 wind 5.0 4320 < th dose independent rect. 22 3
77 317.16 wind 5.0 4320 > th dose independent rect. 22 3
84 317.45 wind 5.0 4320 > th dose dependent rect. 22 3
94 318.02 wind 1.0 30 < th dose dependent rect. 15 7
95 318.03 atmosphere 1015.0 4320 < th dose independent rect. 14 2
98 318.12 atmosphere 1015.0 4320 > th dose independent rect. 14 1
105 318.56 wind 1.0 10 < th dose dependent rect. 17 5
135 319.26 atmosphere 1015.0 4320 < th dose independent rect. 19 1
142 319.32 atmosphere 1015.0 4320 > th dose independent rect. 13 7
158 319.55 wind 3.0 43200 > th dose dependent rect. 23 2
178 319.92 atmosphere 1015.0 4320 > th dose dependent rect. 12 8
182 319.98 wind 3.0 1440 > th dose dependent rect. 22 8
186 320.04 atmosphere 1015.0 4320 > th dose dependent rect. 13 4
194 320.14 wind 5.0 1440 < th dose independent rect. 22 8
201 320.19 wind 1.0 90 < th dose dependent rect. 21 1
206 320.26 wind 1.0 10 < th dose independent rect. 21 1
210 320.26 wind 1.0 10 < th dose dependent rect. 21 1
214 320.27 wind 5.0 1440 > th dose independent rect. 22 9
237 320.51 humidity 50.0 4320 < th dose dependent rect. 14 2
254 320.84 radiation 1.0 4320 < th dose independent rect. 6 4
255 320.88 wind 1.0 90 < th dose independent rect. 21 1
256 320.88 wind 3.0 4320 > th dose dependent rect. 20 7
261 320.93 radiation 1.0 4320 > th dose independent rect. 6 4
264 320.98 precipitation 0.1 1440 > th dose independent rect. 23 1
265 320.98 precipitation 0.1 1440 > th dose dependent rect. 23 1
284 321.14 wind 5.0 4320 < th dose independent rect. 19 8
297 321.25 atmosphere 1015.0 4320 > th dose dependent rect. 4 1
316 321.39 wind 5.0 43200 < th dose independent rect. 22 3
398 322.28 precipitation 0.1 4320 < th dose independent rect. 20 1
400 322.28 precipitation 0.1 4320 < th dose dependent rect. 20 1
405 322.31 precipitation 0.1 4320 > th dose independent rect. 20 1
406 322.35 precipitation 0.1 1440 < th dose independent rect. 22 1
408 322.35 precipitation 0.1 1440 < th dose dependent rect. 22 1
410 322.39 wind 5.0 4320 > th dose independent rect. 19 8
432 322.56 humidity 90.0 4320 < th dose independent rect. 15 1
455 322.82 wind 5.0 43200 > th dose independent rect. 22 3
472 322.95 radiation 1.0 4320 < th dose dependent rect. 6 5
481 323.03 precipitation 0.1 4320 > th dose independent rect. 20 3
499 323.12 precipitation 0.1 4320 < th dose independent rect. 20 3
500 323.12 precipitation 0.1 4320 < th dose dependent rect. 20 3
507 323.19 wind 1.0 270 < th dose independent rect. 17 1
510 323.19 wind 1.0 270 < th dose dependent rect. 17 1
515 323.26 humidity 80.0 90 < th dose independent rect. 2 2
518 323.28 humidity 50.0 720 < th dose independent rect. 11 1
536 323.28 humidity 50.0 720 < th dose dependent rect. 11 1
537 323.28 humidity 80.0 90 < th dose dependent rect. 2 2
560 323.31 humidity 90.0 10 < th dose dependent rect. 3 1
581 323.58 wind 9.0 1440 < th dose dependent rect. 23 2
601 323.72 humidity 80.0 10 < th dose independent rect. 3 1
673 324.00 atmosphere 1015.0 4320 < th dose independent rect. 5 1
682 324.02 atmosphere 1015.0 4320 > th dose independent rect. 4 1
725 324.22 humidity 50.0 14400 < th dose dependent rect. 12 1
766 324.40 atmosphere 1000.0 10 > th dose independent rect. 2 2
845 324.82 atmosphere 1015.0 4320 > th dose independent rect. 10 1
853 324.84 atmosphere 1015.0 4320 < th dose independent rect. 10 1
884 324.97 temperature 20.0 30 < th dose independent sin 4 NA
885 324.97 humidity 50.0 4320 > th dose independent rect. 13 1
898 325.02 radiation 10.0 4320 < th dose dependent rect. 12 1
907 325.07 atmosphere 1015.0 4320 > th dose dependent sin 20 NA
915 325.12 atmosphere 1015.0 4320 < th dose independent rect. 4 8
916 325.13 atmosphere 1015.0 4320 > th dose independent rect. 4 8