FiT-DB / Search/ Help/ Sample detail

Os07g0434100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.83 (0.0175) R2 : 0.439
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.735 (0.0427) R2dC : 0.368 R2C : 0.345
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.282 (0.0367) R2dN8 : 0.0939 R2N8 : 0.0713
σ : 0.329
deviance : 49.52
__
_____
C
peak time of C : 9.79
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.81 0.315 8.74 0.28 0.739 -0.416 -0.228 -2.01 0.353 9.82 19.8 5839 -- --
48.65 0.325 8.82 0.0357 0.765 0.262 -0.227 -- 0.311 9.72 16.4 9321 -- --
44.81 0.312 8.74 0.266 0.734 -0.442 -- -2.15 0.349 9.77 19.3 6690 -- --
47.37 0.321 8.82 0.21 0.728 0.305 -- -- 0.342 9.9 14.5 28098 -- --
77.23 0.409 8.76 0.248 -- -0.453 -- -2.21 0.364 -- 19.2 6718 -- --
49.35 0.329 8.83 0.0167 0.734 -- -0.208 -- 0.284 9.8 -- -- -- --
49.51 0.33 8.83 0.00875 0.735 -- -- -- 0.283 9.8 -- -- -- --
79.22 0.415 8.82 0.277 -- 0.368 -- -- 0.392 -- 14.57 28115 -- --
48.34 0.324 8.82 -- 0.733 0.249 -- -- 0.314 9.78 14 28216 -- --
81.78 0.423 8.85 0.00136 -- -- -- -- 0.284 -- -- -- -- --
49.52 0.329 8.83 -- 0.735 -- -- -- 0.282 9.79 -- -- -- --
80.27 0.417 8.84 -- -- 0.267 -- -- 0.314 -- 14.1 26816 -- --
81.78 0.422 8.85 -- -- -- -- -- 0.284 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.22 temperature 20.0 4320 > th dose independent rect. 22 1
2 43.36 precipitation 0.1 14400 > th dose dependent rect. 16 2
3 43.38 temperature 20.0 4320 < th dose independent rect. 22 1
4 43.55 precipitation 0.1 14400 > th dose dependent rect. 18 1
7 43.66 precipitation 0.1 14400 < th dose independent rect. 16 1
8 43.66 precipitation 0.1 14400 < th dose dependent rect. 16 1
9 43.68 precipitation 0.1 14400 > th dose independent rect. 16 1
11 43.74 precipitation 0.1 14400 > th dose independent rect. 18 1
12 43.81 precipitation 0.1 14400 < th dose independent rect. 18 1
13 43.81 precipitation 0.1 14400 < th dose dependent rect. 18 1
15 43.87 precipitation 0.1 14400 > th dose dependent rect. 16 4
17 43.90 humidity 90.0 4320 > th dose dependent rect. 7 2
18 43.93 precipitation 0.1 14400 < th dose independent rect. 16 4
19 43.93 precipitation 0.1 14400 < th dose dependent rect. 16 4
20 43.94 precipitation 0.1 14400 > th dose independent rect. 16 4
34 44.12 wind 1.0 1440 < th dose independent rect. 12 7
44 44.16 humidity 80.0 14400 > th dose independent rect. 13 1
49 44.22 precipitation 0.1 4320 > th dose dependent rect. 3 1
53 44.24 precipitation 0.1 4320 > th dose dependent rect. 3 3
57 44.26 temperature 20.0 1440 > th dose dependent rect. 21 2
62 44.30 wind 1.0 1440 > th dose independent rect. 12 7
63 44.30 temperature 20.0 1440 > th dose dependent rect. 21 8
64 44.31 humidity 60.0 43200 > th dose independent rect. 9 1
76 44.35 temperature 20.0 4320 < th dose independent rect. 20 7
83 44.36 temperature 20.0 1440 > th dose dependent rect. 2 1
93 44.38 precipitation 0.1 4320 > th dose dependent rect. 3 6
101 44.40 precipitation 0.1 4320 > th dose independent rect. 4 2
111 44.41 precipitation 0.1 14400 > th dose independent rect. 11 9
112 44.41 precipitation 0.1 14400 < th dose independent rect. 11 9
116 44.41 precipitation 0.1 14400 < th dose dependent rect. 11 9
118 44.42 wind 1.0 1440 < th dose dependent rect. 12 7
128 44.44 temperature 20.0 1440 > th dose dependent rect. 1 4
132 44.45 temperature 20.0 4320 > th dose independent rect. 20 7
142 44.46 wind 1.0 4320 > th dose independent rect. 17 2
143 44.46 precipitation 0.1 4320 < th dose independent rect. 4 2
149 44.46 precipitation 0.1 4320 < th dose dependent rect. 4 2
161 44.48 wind 1.0 1440 < th dose independent rect. 9 10
173 44.49 precipitation 0.1 14400 > th dose dependent rect. 11 6
185 44.51 precipitation 0.1 4320 > th dose independent rect. 3 6
198 44.53 radiation 1.0 14400 < th dose dependent rect. 7 1
210 44.55 wind 1.0 1440 < th dose independent rect. 12 2
212 44.55 precipitation 0.1 4320 < th dose independent rect. 3 6
213 44.55 precipitation 0.1 14400 < th dose independent rect. 11 6
216 44.55 precipitation 0.1 4320 < th dose dependent rect. 3 6
217 44.55 precipitation 0.1 14400 < th dose dependent rect. 11 6
218 44.56 humidity 90.0 14400 > th dose independent rect. 7 1
219 44.56 humidity 80.0 14400 < th dose independent rect. 13 2
228 44.58 precipitation 0.1 14400 > th dose independent rect. 11 6
235 44.59 humidity 60.0 43200 < th dose independent rect. 9 1
245 44.59 precipitation 0.1 14400 > th dose dependent rect. 11 9
246 44.59 precipitation 0.1 4320 > th dose dependent rect. 3 14
248 44.60 precipitation 0.1 4320 > th dose independent rect. 7 1
251 44.60 precipitation 0.1 4320 > th dose dependent rect. 7 1
257 44.61 precipitation 0.1 4320 < th dose independent rect. 7 1
260 44.61 precipitation 0.1 4320 < th dose dependent rect. 7 1
275 44.63 wind 1.0 43200 > th dose independent rect. 5 1
278 44.63 humidity 80.0 14400 > th dose independent rect. 10 6
279 44.63 wind 1.0 1440 < th dose dependent rect. 12 2
298 44.66 temperature 20.0 1440 < th dose independent rect. 4 2
306 44.67 wind 1.0 270 > th dose independent rect. 23 15
313 44.68 humidity 80.0 14400 > th dose independent rect. 10 1
326 44.69 precipitation 0.1 4320 < th dose independent rect. 3 14
329 44.69 precipitation 0.1 4320 < th dose dependent rect. 3 14
346 44.71 humidity 90.0 14400 < th dose independent rect. 23 8
350 44.72 wind 1.0 4320 < th dose independent rect. 17 2
354 44.72 precipitation 0.1 4320 > th dose independent rect. 3 14
364 44.74 wind 1.0 1440 > th dose independent rect. 12 2
381 44.75 temperature 20.0 720 > th dose dependent sin 10 NA
392 44.76 temperature 20.0 1440 > th dose dependent sin 12 NA
394 44.76 wind 1.0 1440 < th dose dependent rect. 12 4
396 44.77 temperature 20.0 4320 < th dose independent sin 13 NA
397 44.77 wind 1.0 1440 < th dose independent rect. 12 4
437 44.79 precipitation 0.1 14400 > th dose dependent rect. 16 13
451 44.81 temperature 20.0 1440 > th dose independent rect. 4 2
452 44.81 humidity 90.0 14400 < th dose independent rect. 23 5
457 44.81 radiation 10.0 1440 < th dose dependent rect. 7 1
461 44.82 temperature 20.0 4320 > th dose independent sin 13 NA
488 44.85 wind 1.0 1440 < th dose independent rect. 9 5
527 44.87 precipitation 0.1 14400 > th dose dependent rect. 13 17
546 44.89 humidity 80.0 1440 < th dose independent rect. 11 1
551 44.89 humidity 90.0 14400 > th dose independent rect. 23 9
579 44.91 humidity 90.0 14400 < th dose independent rect. 24 1
588 44.91 humidity 80.0 14400 > th dose dependent rect. 14 1
598 44.92 wind 1.0 43200 < th dose dependent rect. 5 1
603 44.92 wind 1.0 1440 < th dose dependent rect. 9 10
630 44.95 atmosphere 1015.0 43200 < th dose independent rect. 3 1
645 44.96 humidity 90.0 14400 > th dose independent rect. 3 5
664 44.97 wind 3.0 14400 < th dose dependent rect. 21 5
678 44.98 precipitation 0.1 14400 > th dose independent rect. 15 15
690 44.99 atmosphere 1015.0 43200 > th dose independent rect. 3 1
695 44.99 wind 1.0 1440 > th dose independent rect. 12 4
698 44.99 humidity 80.0 14400 < th dose independent rect. 10 6
703 44.99 precipitation 0.1 14400 < th dose independent rect. 15 15
705 44.99 wind 3.0 43200 < th dose dependent rect. 24 2
706 44.99 precipitation 0.1 14400 < th dose dependent rect. 15 15
714 45.00 humidity 90.0 14400 > th dose independent rect. 22 6
745 45.01 precipitation 0.1 14400 < th dose independent rect. 11 19
746 45.01 precipitation 0.1 14400 > th dose dependent rect. 13 1
754 45.01 precipitation 0.1 14400 < th dose dependent rect. 11 19
756 45.01 precipitation 0.1 14400 > th dose dependent rect. 21 23
768 45.02 precipitation 0.1 14400 > th dose independent rect. 11 19
776 45.03 wind 1.0 43200 < th dose independent rect. 5 1
796 45.03 atmosphere 1015.0 43200 > th dose dependent rect. 1 1
818 45.05 humidity 90.0 14400 < th dose independent rect. 7 1
845 45.06 humidity 90.0 14400 > th dose independent rect. 23 4
858 45.06 temperature 20.0 270 > th dose dependent rect. 5 1
898 45.07 precipitation 0.1 4320 > th dose dependent rect. 18 23
953 45.10 temperature 20.0 4320 < th dose independent rect. 1 2
968 45.10 humidity 80.0 14400 > th dose dependent rect. 9 6
980 45.11 atmosphere 1015.0 43200 > th dose independent rect. 10 5
983 45.11 atmosphere 1015.0 43200 < th dose independent rect. 10 6
1000 45.11 precipitation 0.1 14400 > th dose dependent rect. 24 20