Os07g0433200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0433200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.2 | 0.548 | 9.73 | -1.45 | 2.73 | -1.31 | 2.03 | 1.18 | 0.291 | 7.95 | 3.011 | 1423 | -- | -- |
| 137.61 | 0.546 | 9.73 | -1.33 | 2.73 | -1.44 | 2.03 | -- | 0.295 | 7.99 | 2.719 | 1419 | -- | -- |
| 147.81 | 0.566 | 9.73 | -1.44 | 2.74 | -1.22 | -- | 1.67 | 0.289 | 8.06 | 3.142 | 1390 | -- | -- |
| 149.91 | 0.57 | 9.72 | -1.25 | 2.75 | -1.39 | -- | -- | 0.333 | 8 | 2.641 | 1417 | -- | -- |
| 454.41 | 0.998 | 9.74 | -0.943 | -- | -1.07 | -- | -0.347 | 0.544 | -- | 3.142 | 1390 | -- | -- |
| 164.1 | 0.601 | 9.67 | -1.02 | 2.72 | -- | 1.98 | -- | 0.543 | 7.87 | -- | -- | -- | -- |
| 175.5 | 0.62 | 9.67 | -0.971 | 2.72 | -- | -- | -- | 0.541 | 7.88 | -- | -- | -- | -- |
| 454.75 | 0.998 | 9.75 | -0.939 | -- | -1.07 | -- | -- | 0.536 | -- | 3.736 | 7327 | -- | -- |
| 184.46 | 0.633 | 9.7 | -- | 2.78 | -0.832 | -- | -- | 0.401 | 8 | 9.999 | 1408 | -- | -- |
| 577.15 | 1.12 | 9.74 | -0.941 | -- | -- | -- | -- | 0.578 | -- | -- | -- | -- | -- |
| 200.35 | 0.662 | 9.64 | -- | 2.71 | -- | -- | -- | 0.649 | 7.91 | -- | -- | -- | -- |
| 478 | 1.02 | 9.72 | -- | -- | -1.07 | -- | -- | 0.634 | -- | 4.134 | 1530 | -- | -- |
| 600.49 | 1.14 | 9.71 | -- | -- | -- | -- | -- | 0.682 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.22 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 2 | 129.36 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 8 | 129.63 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 14 | 129.94 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 30 | 130.37 | humidity | 80 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 32 | 130.48 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 41 | 131.02 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 58 | 131.28 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 17 |
| 81 | 131.94 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 90 | 132.15 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 92 | 132.20 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 115 | 132.55 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 6 |
| 122 | 132.66 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 124 | 132.78 | humidity | 80 | 720 | < th | dose independent | rect. | 20 | 1 |
| 134 | 132.99 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 162 | 133.54 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 202 | 134.29 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 205 | 134.34 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 243 | 134.85 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 254 | 134.96 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 289 | 135.28 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 4 |
| 307 | 135.57 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 337 | 135.73 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 6 |
| 343 | 135.77 | humidity | 80 | 720 | > th | dose independent | rect. | 19 | 4 |
| 363 | 135.92 | humidity | 80 | 720 | > th | dose independent | rect. | 20 | 2 |
| 388 | 136.13 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 452 | 136.55 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 455 | 136.57 | humidity | 60 | 720 | > th | dose dependent | sin | 14 | NA |
| 493 | 136.89 | humidity | 70 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 494 | 136.90 | radiation | 10 | 1440 | > th | dose independent | sin | 21 | NA |
| 534 | 137.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 543 | 137.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 621 | 137.31 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 635 | 137.41 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 639 | 137.44 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 644 | 137.46 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 655 | 137.49 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 676 | 137.56 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 679 | 137.57 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 725 | 137.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 816 | 138.02 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 870 | 138.10 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 966 | 138.14 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 15 |
| 990 | 138.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 12 |