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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0432100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0166) R2 : 0.00257
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0379 (0.035) R2dN8 : 0.00331 R2N8 : 0.00257
σ : 0.313
deviance : 44.99
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.99 0.305 3.34 0.666 0.0231 -31.9 -0.366 -65.7 -0.023 4.21 15 90 -- --
43.06 0.308 3.07 0.0916 0.0258 -0.826 -0.351 -- -0.0252 4.52 15 90 -- --
43.24 0.306 3.33 0.657 0.0518 -32 -- -65.7 -0.021 8.32 15 82 -- --
43.26 0.308 3.07 0.097 0.0542 -0.885 -- -- -0.0227 8.57 15 90 -- --
43.39 0.307 3.33 0.653 -- -31.9 -- -65.7 -0.0203 -- 15.01 80 -- --
44.34 0.312 3.08 0.0557 0.02 -- -0.411 -- -0.0337 3.47 -- -- -- --
44.77 0.313 3.07 0.0631 0.0463 -- -- -- -0.0315 7.59 -- -- -- --
43.38 0.307 3.07 0.103 -- -0.871 -- -- -0.0205 -- 14.79 95 -- --
43.5 0.309 3.07 -- 0.0541 -0.835 -- -- -0.0338 8.39 15 90 -- --
44.89 0.313 3.07 0.0637 -- -- -- -- -0.0308 -- -- -- -- --
44.87 0.313 3.07 -- 0.0468 -- -- -- -0.0386 7.5 -- -- -- --
43.65 0.308 3.08 -- -- -0.81 -- -- -0.0338 -- 14.67 109 -- --
44.99 0.313 3.08 -- -- -- -- -- -0.0379 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.75 temperature 20.0 30 > th dose dependent rect. 2 1
2 40.80 atmosphere 1005.0 30 > th dose dependent rect. 2 1
3 40.81 temperature 20.0 30 > th dose independent rect. 2 1
4 40.81 atmosphere 1005.0 30 > th dose independent rect. 2 1
10 40.89 wind 3.0 30 < th dose dependent rect. 2 1
11 40.90 wind 3.0 30 < th dose independent rect. 2 1
17 40.94 humidity 80.0 30 > th dose independent rect. 2 1
19 40.96 temperature 10.0 30 > th dose independent rect. 2 1
21 40.96 temperature 30.0 30 < th dose independent rect. 2 1
22 40.96 humidity 50.0 30 > th dose independent rect. 2 1
26 40.96 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 40.96 radiation 1.0 30 < th dose independent rect. 2 1
33 40.96 precipitation 0.1 30 < th dose independent rect. 2 1
34 40.96 temperature 10.0 30 > th dose independent rect. 3 23
35 40.96 humidity 50.0 30 > th dose dependent rect. 2 1
38 40.96 radiation 1.0 30 < th dose dependent rect. 2 1
43 40.96 precipitation 0.1 30 < th dose dependent rect. 2 1
50 41.19 atmosphere 1015.0 30 < th dose dependent rect. 2 1
51 41.25 temperature 30.0 30 < th dose dependent rect. 2 1
53 41.31 wind 1.0 30 > th dose independent rect. 2 1
60 41.40 temperature 15.0 1440 > th dose independent rect. 23 1
61 41.42 atmosphere 1000.0 720 > th dose independent rect. 3 8
71 41.58 radiation 10.0 43200 < th dose dependent rect. 3 1
72 41.59 radiation 1.0 4320 < th dose dependent rect. 3 1
82 41.61 wind 9.0 1440 < th dose independent rect. 3 1
83 41.61 temperature 10.0 1440 > th dose independent rect. 3 1
86 41.61 temperature 30.0 1440 < th dose independent rect. 3 1
90 41.61 humidity 50.0 1440 > th dose independent rect. 3 1
99 41.61 atmosphere 995.0 1440 > th dose independent rect. 3 1
100 41.61 radiation 1.0 1440 < th dose independent rect. 3 1
120 41.61 temperature 10.0 1440 > th dose independent rect. 4 23
131 41.65 temperature 15.0 30 > th dose independent rect. 23 23
137 41.73 wind 9.0 30 < th dose independent rect. 3 23
167 41.80 atmosphere 995.0 30 > th dose independent rect. 23 23
169 41.81 atmosphere 1000.0 30 > th dose independent rect. 3 23
170 41.82 precipitation 0.1 720 < th dose independent rect. 23 16
171 41.82 radiation 20.0 30 > th dose independent rect. 15 17
173 41.82 precipitation 0.1 720 < th dose dependent rect. 23 16
175 41.85 atmosphere 995.0 720 > th dose independent rect. 23 16
176 41.86 temperature 15.0 10 > th dose independent rect. 17 9
177 41.87 temperature 15.0 30 > th dose independent rect. 5 21
181 41.89 radiation 20.0 90 > th dose dependent rect. 15 17
185 41.92 temperature 15.0 10 > th dose independent rect. 14 12
186 41.93 radiation 20.0 10 > th dose independent rect. 16 1
222 41.98 temperature 25.0 90 > th dose independent rect. 1 3
223 42.00 temperature 30.0 10 > th dose independent rect. 15 1
227 42.01 precipitation 0.1 30 < th dose independent rect. 3 23
228 42.01 precipitation 0.1 30 < th dose dependent rect. 3 23
230 42.03 temperature 25.0 90 > th dose dependent rect. 1 3
234 42.07 temperature 15.0 720 > th dose independent rect. 14 1
239 42.12 atmosphere 995.0 720 > th dose independent rect. 11 16
247 42.17 atmosphere 995.0 720 > th dose independent rect. 15 8
258 42.25 temperature 15.0 720 > th dose independent rect. 14 9
261 42.26 temperature 10.0 720 > th dose independent rect. 23 16
263 42.27 temperature 10.0 720 > th dose independent rect. 3 8
265 42.27 humidity 50.0 720 > th dose independent rect. 3 8
267 42.27 temperature 10.0 720 > th dose independent rect. 11 16
291 42.36 wind 9.0 720 < th dose independent rect. 3 8
292 42.37 wind 1.0 720 < th dose dependent rect. 6 1
300 42.41 precipitation 0.1 720 < th dose independent rect. 3 8
303 42.41 precipitation 0.1 720 < th dose dependent rect. 3 8
305 42.42 humidity 90.0 1440 > th dose dependent rect. 11 3
323 42.43 radiation 20.0 90 > th dose dependent rect. 15 1
324 42.44 humidity 90.0 90 < th dose independent rect. 2 1
333 42.46 precipitation 0.1 720 < th dose independent rect. 15 8
335 42.46 precipitation 0.1 720 < th dose dependent rect. 15 8
336 42.47 humidity 90.0 1440 > th dose independent rect. 11 3
341 42.49 temperature 30.0 720 < th dose independent rect. 3 8
346 42.49 wind 1.0 720 < th dose dependent rect. 5 3
395 42.54 temperature 15.0 1440 > th dose independent rect. 11 12
417 42.55 temperature 30.0 90 > th dose dependent rect. 14 1
427 42.60 temperature 15.0 1440 > th dose independent rect. 18 5
431 42.61 temperature 15.0 270 > th dose independent rect. 20 13
435 42.63 humidity 90.0 720 < th dose independent rect. 14 1
439 42.64 atmosphere 1005.0 30 > th dose independent rect. 2 3
441 42.64 atmosphere 1015.0 1440 < th dose independent rect. 24 8
448 42.66 temperature 15.0 1440 > th dose independent rect. 19 2
449 42.66 humidity 90.0 1440 < th dose independent rect. 11 3
450 42.66 temperature 10.0 720 > th dose dependent rect. 14 1
458 42.67 temperature 15.0 90 > th dose independent rect. 16 23
460 42.68 wind 9.0 4320 < th dose independent rect. 23 1
461 42.68 temperature 15.0 1440 > th dose independent rect. 16 2
475 42.70 temperature 25.0 30 > th dose dependent rect. 22 1
481 42.71 temperature 30.0 1440 < th dose independent rect. 23 1
485 42.71 humidity 50.0 1440 > th dose independent rect. 23 1
495 42.71 atmosphere 995.0 1440 > th dose independent rect. 23 1
496 42.71 radiation 1.0 1440 < th dose independent rect. 23 1
517 42.71 precipitation 0.1 720 > th dose independent rect. 14 2
518 42.71 temperature 15.0 720 > th dose independent rect. 13 7
519 42.71 precipitation 0.1 720 > th dose independent rect. 8 9
522 42.71 temperature 10.0 1440 > th dose independent rect. 24 23
525 42.71 humidity 90.0 30 < th dose dependent rect. 22 1
526 42.71 radiation 1.0 1440 < th dose dependent rect. 23 1
531 42.71 precipitation 0.1 720 > th dose dependent rect. 14 2
533 42.72 humidity 90.0 30 < th dose independent rect. 22 1
541 42.72 temperature 15.0 720 > th dose independent rect. 5 18
543 42.72 temperature 30.0 720 > th dose dependent rect. 8 1
544 42.72 atmosphere 1005.0 30 > th dose dependent rect. 22 1
558 42.73 radiation 20.0 10 > th dose independent sin 12 NA
560 42.73 temperature 25.0 30 > th dose independent rect. 22 1
561 42.73 atmosphere 1005.0 30 > th dose independent rect. 22 1
567 42.73 temperature 15.0 270 > th dose independent rect. 14 23
571 42.74 radiation 40.0 720 < th dose independent rect. 15 8
578 42.75 wind 1.0 30 > th dose independent rect. 22 1
580 42.75 wind 1.0 720 < th dose independent rect. 5 3
585 42.75 temperature 10.0 30 > th dose dependent rect. 22 1
591 42.76 wind 5.0 30 < th dose independent rect. 22 1
594 42.76 temperature 10.0 30 > th dose independent rect. 22 1
596 42.76 temperature 30.0 30 < th dose independent rect. 22 1
597 42.76 humidity 50.0 30 > th dose independent rect. 22 1
600 42.76 atmosphere 995.0 30 > th dose independent rect. 22 1
602 42.76 atmosphere 1010.0 30 < th dose independent rect. 22 1
604 42.76 radiation 1.0 30 < th dose independent rect. 22 1
609 42.76 precipitation 0.1 30 < th dose independent rect. 22 1
614 42.76 temperature 15.0 1440 > th dose independent rect. 8 16
616 42.76 wind 1.0 30 > th dose dependent rect. 22 1
617 42.76 wind 9.0 30 < th dose dependent rect. 22 1
619 42.76 radiation 1.0 30 < th dose dependent rect. 22 1
624 42.76 precipitation 0.1 30 < th dose dependent rect. 22 1
625 42.76 precipitation 0.1 720 > th dose dependent rect. 8 9
631 42.77 temperature 25.0 270 > th dose independent rect. 22 5
636 42.77 atmosphere 1015.0 1440 < th dose independent rect. 24 10
638 42.77 wind 5.0 30 < th dose dependent rect. 22 1
641 42.77 humidity 50.0 30 > th dose dependent rect. 22 1
660 42.78 atmosphere 1015.0 720 < th dose independent rect. 3 8
662 42.78 temperature 15.0 1440 > th dose independent rect. 8 11
676 42.79 precipitation 0.1 720 > th dose independent rect. 12 5
677 42.79 atmosphere 1015.0 1440 < th dose independent rect. 24 6
683 42.79 temperature 30.0 90 > th dose dependent rect. 10 1
694 42.80 atmosphere 1010.0 10 < th dose independent rect. 17 9
699 42.80 atmosphere 1015.0 30 < th dose dependent rect. 22 1
713 42.81 temperature 30.0 30 < th dose dependent rect. 22 1
718 42.82 atmosphere 995.0 10 > th dose independent sin 4 NA
731 42.82 wind 9.0 30 < th dose independent rect. 23 23
750 42.83 atmosphere 1015.0 1440 < th dose independent rect. 1 1
752 42.83 humidity 90.0 90 < th dose independent rect. 2 3
753 42.83 temperature 15.0 720 > th dose independent rect. 13 4
757 42.83 precipitation 0.1 1440 < th dose independent rect. 5 11
765 42.83 wind 3.0 30 < th dose dependent rect. 2 3
766 42.83 precipitation 0.1 1440 < th dose dependent rect. 5 11
767 42.84 atmosphere 995.0 30 > th dose independent sin 7 NA
797 42.85 temperature 30.0 30 < th dose independent rect. 3 23
804 42.85 precipitation 0.1 720 > th dose dependent rect. 12 5
811 42.86 temperature 15.0 90 > th dose independent sin 8 NA
815 42.86 temperature 15.0 90 > th dose independent sin 16 NA
834 42.87 temperature 30.0 720 > th dose independent rect. 8 1
841 42.87 wind 9.0 720 < th dose independent rect. 15 8
855 42.87 wind 1.0 14400 < th dose dependent rect. 4 4
856 42.87 precipitation 0.1 720 > th dose dependent rect. 14 4
861 42.88 temperature 15.0 90 > th dose independent sin 21 NA
863 42.88 radiation 20.0 30 < th dose independent sin 12 NA
894 42.89 radiation 10.0 30 < th dose independent rect. 5 21
917 42.90 temperature 15.0 10 > th dose independent rect. 17 14
928 42.90 temperature 30.0 30 > th dose dependent rect. 15 19
938 42.91 temperature 15.0 270 > th dose independent sin 23 NA
941 42.91 wind 1.0 14400 < th dose independent rect. 4 3
956 42.91 temperature 30.0 30 < th dose independent rect. 2 15
963 42.91 humidity 90.0 720 > th dose dependent rect. 11 6
997 42.92 temperature 15.0 10 > th dose independent sin 1 NA