Os07g0426000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0426000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 238.16 | 0.725 | 7.05 | -0.533 | 1.16 | 1.51 | 1.02 | -3.62 | 0.284 | 13.6 | 24.63 | 45 | -- | -- |
| 243.35 | 0.727 | 7.01 | -0.0974 | 1.17 | 1.32 | 0.447 | -- | 0.357 | 13.6 | 24.3 | 45 | -- | -- |
| 241.48 | 0.724 | 7.03 | -0.362 | 1.16 | 1.48 | -- | -2.44 | 0.323 | 13.6 | 24.69 | 46 | -- | -- |
| 244.04 | 0.728 | 6.99 | -0.0704 | 1.18 | 1.25 | -- | -- | 0.402 | 13.6 | 24.52 | 45 | -- | -- |
| 294.24 | 0.799 | 7.09 | -0.716 | -- | 2.59 | -- | -3.53 | 0.119 | -- | 24.31 | 16 | -- | -- |
| 265.45 | 0.764 | 6.97 | 0.113 | 1.66 | -- | 0.885 | -- | 0.525 | 14.1 | -- | -- | -- | -- |
| 268.4 | 0.767 | 6.97 | 0.139 | 1.66 | -- | -- | -- | 0.53 | 14.1 | -- | -- | -- | -- |
| 300.72 | 0.808 | 7.04 | -0.288 | -- | 2.33 | -- | -- | 0.232 | -- | 24.21 | 16 | -- | -- |
| 244.12 | 0.728 | 6.99 | -- | 1.2 | 1.23 | -- | -- | 0.427 | 13.6 | 24.74 | 45 | -- | -- |
| 433.92 | 0.973 | 6.98 | 0.0699 | -- | -- | -- | -- | 0.491 | -- | -- | -- | -- | -- |
| 268.91 | 0.767 | 6.97 | -- | 1.66 | -- | -- | -- | 0.515 | 14.1 | -- | -- | -- | -- |
| 302.51 | 0.813 | 7.03 | -- | -- | 2.27 | -- | -- | 0.281 | -- | 24.21 | 16 | -- | -- |
| 434.05 | 0.972 | 6.98 | -- | -- | -- | -- | -- | 0.483 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 233.62 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 15 |
| 5 | 235.46 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 7 | 235.75 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 22 | 237.22 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 20 |
| 24 | 237.32 | humidity | 60 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 36 | 237.81 | temperature | 25 | 30 | > th | dose dependent | rect. | 24 | 21 |
| 40 | 237.92 | humidity | 80 | 10 | > th | dose dependent | sin | 22 | NA |
| 58 | 238.32 | humidity | 60 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 63 | 238.44 | humidity | 60 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 101 | 238.85 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 103 | 238.86 | humidity | 60 | 10 | > th | dose dependent | no | NA | NA |
| 105 | 238.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 5 |
| 106 | 238.91 | humidity | 60 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 120 | 239.07 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 2 |
| 140 | 239.31 | humidity | 80 | 10 | < th | dose independent | rect. | 7 | 14 |
| 193 | 239.62 | humidity | 70 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 195 | 239.64 | humidity | 70 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 208 | 239.73 | humidity | 80 | 10 | < th | dose independent | rect. | 7 | 17 |
| 216 | 239.81 | humidity | 70 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 246 | 240.10 | humidity | 60 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 248 | 240.10 | temperature | 25 | 30 | > th | dose dependent | rect. | 20 | 23 |
| 271 | 240.27 | humidity | 70 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 276 | 240.30 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 277 | 240.31 | radiation | 1 | 270 | < th | dose dependent | rect. | 14 | 19 |
| 373 | 240.79 | radiation | 1 | 270 | < th | dose independent | rect. | 14 | 19 |
| 374 | 240.79 | radiation | 1 | 270 | < th | dose independent | rect. | 14 | 21 |
| 375 | 240.79 | humidity | 80 | 10 | > th | dose independent | rect. | 21 | 23 |
| 376 | 240.79 | radiation | 1 | 270 | > th | dose independent | rect. | 12 | 23 |
| 391 | 240.84 | humidity | 70 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 397 | 240.88 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 14 |
| 438 | 241.08 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 2 |
| 442 | 241.09 | humidity | 70 | 270 | > th | dose independent | rect. | 9 | 20 |
| 482 | 241.30 | humidity | 50 | 720 | > th | dose dependent | rect. | 10 | 4 |
| 483 | 241.31 | humidity | 60 | 270 | > th | dose dependent | rect. | 8 | 21 |
| 503 | 241.47 | humidity | 60 | 90 | > th | dose dependent | rect. | 11 | 6 |
| 512 | 241.52 | radiation | 1 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 542 | 241.68 | radiation | 1 | 270 | < th | dose dependent | no | NA | NA |
| 550 | 241.71 | radiation | 1 | 270 | < th | dose independent | rect. | 10 | 23 |
| 553 | 241.72 | radiation | 10 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 564 | 241.77 | radiation | 1 | 270 | > th | dose independent | no | NA | NA |
| 565 | 241.77 | radiation | 1 | 270 | < th | dose independent | no | NA | NA |
| 630 | 241.83 | radiation | 1 | 270 | < th | dose independent | rect. | 6 | 23 |
| 636 | 241.85 | humidity | 90 | 30 | < th | dose dependent | rect. | 6 | 15 |
| 676 | 242.06 | humidity | 60 | 270 | > th | dose dependent | rect. | 9 | 8 |
| 688 | 242.13 | humidity | 80 | 10 | > th | dose independent | rect. | 7 | 23 |
| 694 | 242.16 | humidity | 60 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 698 | 242.20 | temperature | 30 | 30 | < th | dose independent | rect. | 11 | 20 |
| 727 | 242.37 | humidity | 70 | 270 | > th | dose independent | rect. | 9 | 8 |
| 771 | 242.57 | humidity | 80 | 10 | > th | dose independent | sin | 22 | NA |
| 783 | 242.61 | radiation | 1 | 270 | < th | dose independent | rect. | 20 | 23 |
| 830 | 242.81 | humidity | 90 | 90 | < th | dose dependent | rect. | 14 | 21 |
| 834 | 242.82 | radiation | 10 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 879 | 242.93 | humidity | 80 | 10 | < th | dose independent | rect. | 13 | 23 |
| 924 | 243.11 | humidity | 90 | 30 | < th | dose dependent | rect. | 6 | 19 |
| 941 | 243.18 | humidity | 70 | 90 | > th | dose independent | rect. | 11 | 6 |
| 953 | 243.22 | humidity | 80 | 10 | > th | dose independent | rect. | 2 | 22 |
| 956 | 243.22 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 965 | 243.24 | temperature | 25 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 967 | 243.24 | humidity | 90 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 980 | 243.28 | humidity | 70 | 10 | > th | dose dependent | rect. | 23 | 23 |