Os07g0424400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cellulose synthase-7.
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Os07g0424400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cellulose synthase-7.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 300.58 | 0.815 | 11.3 | -5.01 | 0.467 | 3 | 2.27 | -10.8 | -0.252 | 4.34 | 27.86 | 1245 | -- | -- |
| 313.77 | 0.825 | 11 | -2.66 | 0.493 | 1.91 | 1.99 | -- | 0.0922 | 4.39 | 27.8 | 1182 | -- | -- |
| 313.76 | 0.825 | 11.3 | -4.67 | 0.467 | 2.85 | -- | -8.72 | -0.307 | 3.97 | 27.4 | 1223 | -- | -- |
| 324.69 | 0.839 | 11.1 | -2.76 | 0.453 | 1.93 | -- | -- | -0.0114 | 3.78 | 27.1 | 1204 | -- | -- |
| 325.33 | 0.84 | 11.3 | -4.65 | -- | 2.9 | -- | -8.49 | -0.312 | -- | 27.25 | 1223 | -- | -- |
| 461.86 | 1.01 | 11.1 | -2.15 | 0.729 | -- | 2.2 | -- | -0.0108 | 3.31 | -- | -- | -- | -- |
| 476.15 | 1.02 | 11.1 | -2.19 | 0.739 | -- | -- | -- | -0.0227 | 2.56 | -- | -- | -- | -- |
| 335.48 | 0.853 | 11.1 | -2.78 | -- | 2.04 | -- | -- | -0.0417 | -- | 26.72 | 1204 | -- | -- |
| 506.46 | 1.05 | 11 | -- | 0.492 | 1.49 | -- | -- | 0.495 | 3.54 | 32.09 | 1091 | -- | -- |
| 508.2 | 1.05 | 11.1 | -2.16 | -- | -- | -- | -- | -0.00419 | -- | -- | -- | -- | -- |
| 602.81 | 1.15 | 11 | -- | 0.697 | -- | -- | -- | 0.221 | 2.52 | -- | -- | -- | -- |
| 519.59 | 1.06 | 10.9 | -- | -- | 1.49 | -- | -- | 0.532 | -- | 31.7 | 1116 | -- | -- |
| 631.35 | 1.17 | 11 | -- | -- | -- | -- | -- | 0.236 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 308.78 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 3 | 310.90 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 8 | 314.83 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 42 | 321.72 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 76 | 322.22 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 111 | 323.71 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 118 | 323.88 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 122 | 324.05 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 13 |
| 123 | 324.06 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 172 | 324.74 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 182 | 324.86 | temperature | 30 | 1440 | < th | dose independent | sin | 13 | NA |
| 235 | 325.33 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 296 | 325.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 298 | 325.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 304 | 325.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 306 | 325.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 337 | 325.82 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 383 | 325.95 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 410 | 326.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 22 |
| 420 | 326.12 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 516 | 326.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 544 | 326.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 553 | 326.35 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 2 |
| 585 | 326.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 596 | 326.58 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 604 | 326.62 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 643 | 326.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 695 | 327.01 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 699 | 327.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 700 | 327.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 704 | 327.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 710 | 327.05 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 717 | 327.06 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 733 | 327.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 741 | 327.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 750 | 327.10 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 804 | 327.17 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 811 | 327.19 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 820 | 327.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 827 | 327.31 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 8 |
| 844 | 327.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 865 | 327.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 866 | 327.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 876 | 327.48 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 889 | 327.68 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 890 | 327.68 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |