Os07g0421200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SAC domain protein 3.
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Os07g0421200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SAC domain protein 3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.38 | 0.447 | 8.04 | -1.14 | 0.907 | 0.968 | 0.139 | 0.479 | 0.271 | 14 | 20.6 | 1275 | -- | -- |
| 89.63 | 0.441 | 8.05 | -1.18 | 0.921 | 0.839 | 0.0703 | -- | 0.234 | 13.9 | 21.38 | 1202 | -- | -- |
| 89.78 | 0.441 | 8.04 | -1.06 | 0.878 | 0.88 | -- | 0.527 | 0.268 | 14 | 21.34 | 1328 | -- | -- |
| 89.5 | 0.441 | 8.06 | -1.17 | 0.92 | 0.805 | -- | -- | 0.222 | 14 | 21.7 | 1219 | -- | -- |
| 123.69 | 0.521 | 8.04 | -1.02 | -- | 0.728 | -- | 0.382 | 0.291 | -- | 21.5 | 1614 | -- | -- |
| 110.69 | 0.493 | 8 | -0.862 | 0.847 | -- | 0.189 | -- | 0.464 | 14.1 | -- | -- | -- | -- |
| 110.82 | 0.493 | 8 | -0.857 | 0.847 | -- | -- | -- | 0.466 | 14 | -- | -- | -- | -- |
| 124.3 | 0.522 | 8.05 | -1.1 | -- | 0.717 | -- | -- | 0.267 | -- | 21.5 | 1688 | -- | -- |
| 119.25 | 0.509 | 8.01 | -- | 0.909 | 0.476 | -- | -- | 0.411 | 13.8 | 22.4 | 891 | -- | -- |
| 153.96 | 0.58 | 8.01 | -0.892 | -- | -- | -- | -- | 0.446 | -- | -- | -- | -- | -- |
| 130.16 | 0.534 | 7.98 | -- | 0.864 | -- | -- | -- | 0.561 | 14.1 | -- | -- | -- | -- |
| 153.75 | 0.579 | 8.02 | -- | -- | 0.556 | -- | -- | 0.396 | -- | 22.3 | 1620 | -- | -- |
| 174.94 | 0.617 | 7.99 | -- | -- | -- | -- | -- | 0.545 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 6 | 88.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 12 | 89.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 31 | 89.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 36 | 89.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 49 | 90.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 55 | 90.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 83 | 90.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 88 | 90.33 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 102 | 90.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 151 | 90.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 161 | 90.72 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 19 |
| 165 | 90.75 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 183 | 90.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 21 |
| 187 | 90.82 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 232 | 91.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 271 | 91.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 355 | 91.44 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 410 | 91.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 427 | 91.61 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 514 | 91.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 23 |
| 598 | 91.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 675 | 92.05 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 679 | 92.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 23 |
| 756 | 92.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 805 | 92.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 861 | 92.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 943 | 92.45 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 970 | 92.49 | temperature | 25 | 720 | < th | dose dependent | sin | 0 | NA |
| 995 | 92.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |