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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0419100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.42 (0.0491) R2 : 0.631
β1 : 4.67 (0.182) R2dD : 0.57 R2D : 0.338
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.34 (0.172) R2dE : 0.157 R2E : -0.00474
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.31 (0.106) R2dN8 : 0.17 R2N8 : -0.00587
σ : 0.917
deviance : 387.23
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.47
memory length : 559
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
370.12 0.904 5.42 4.6 0.658 -1.81 2.19 0.114 1.25 5.97 24.6 723 -- --
369.52 0.895 5.39 4.62 0.692 -1.78 2.26 -- 1.35 6.06 22.82 690 -- --
379.72 0.908 5.44 4.38 0.677 -1.64 -- -1.37 1.28 6.22 22.8 657 -- --
380.74 0.909 5.42 4.6 0.459 -1.97 -- -- 1.26 6.7 24.46 595 -- --
387.18 0.916 5.42 4.64 -- -2.31 -- -0.276 1.3 -- 24.42 559 -- --
435.47 0.978 5.44 4.16 1.3 -- 2.71 -- 1.08 6.79 -- -- -- --
454.2 0.998 5.44 4.21 1.31 -- -- -- 1.07 6.85 -- -- -- --
387.23 0.917 5.42 4.67 -- -2.34 -- -- 1.31 -- 24.47 559 -- --
907.36 1.4 5.56 -- 0.987 -0.932 -- -- 0.559 6.87 27.8 578 -- --
544.28 1.09 5.47 4.24 -- -- -- -- 1.09 -- -- -- -- --
921.06 1.42 5.55 -- 1.36 -- -- -- 0.601 6.67 -- -- -- --
941.68 1.43 5.56 -- -- -1.61 -- -- 0.707 -- 25 485 -- --
1017.86 1.49 5.58 -- -- -- -- -- 0.625 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 359.04 temperature 15 90 > th dose dependent rect. 7 22
2 359.49 temperature 10 720 > th dose dependent rect. 7 12
8 363.20 temperature 15 10 > th dose dependent rect. 7 23
12 364.44 temperature 25 4320 > th dose independent rect. 5 1
16 365.07 temperature 10 720 > th dose dependent rect. 7 19
23 365.76 temperature 10 720 > th dose dependent rect. 7 17
34 366.36 temperature 30 270 < th dose dependent rect. 9 22
37 366.51 temperature 25 4320 < th dose independent rect. 4 2
60 367.59 temperature 20 720 > th dose dependent rect. 23 20
75 368.11 temperature 20 720 > th dose dependent rect. 1 18
106 368.75 temperature 25 720 > th dose dependent rect. 14 21
121 368.98 temperature 30 720 < th dose dependent rect. 4 18
131 369.13 temperature 25 720 > th dose dependent rect. 14 23
140 369.31 temperature 10 720 > th dose dependent rect. 21 22
151 369.49 temperature 25 720 > th dose dependent rect. 12 23
171 369.73 temperature 15 270 > th dose dependent rect. 14 23
209 370.12 temperature 20 720 > th dose dependent sin 23 NA
242 370.35 temperature 25 720 > th dose dependent no NA NA
320 370.91 temperature 10 720 > th dose dependent sin 23 NA
465 372.47 temperature 25 4320 > th dose dependent rect. 4 2
486 372.82 temperature 30 90 < th dose dependent rect. 19 23
495 372.95 temperature 10 720 > th dose dependent rect. 12 23
514 373.12 temperature 10 720 > th dose dependent rect. 13 6
529 373.25 temperature 25 720 > th dose independent rect. 7 12
548 373.42 temperature 30 720 < th dose dependent sin 22 NA
551 373.48 temperature 15 30 > th dose dependent rect. 23 23
591 373.80 temperature 30 90 < th dose dependent rect. 3 23
595 373.90 temperature 20 720 > th dose dependent rect. 15 4
616 374.17 temperature 30 90 < th dose dependent no NA NA
689 374.91 temperature 30 30 < th dose dependent rect. 5 23
783 375.71 temperature 30 90 < th dose dependent rect. 15 23
785 375.73 temperature 30 1440 < th dose dependent rect. 17 2
805 375.86 temperature 20 1440 > th dose dependent rect. 17 2
848 376.27 temperature 30 30 < th dose dependent rect. 17 23
857 376.36 wind 9 43200 > th dose dependent rect. 20 10
936 377.02 temperature 20 90 > th dose dependent rect. 1 23
960 377.16 wind 9 43200 > th dose dependent rect. 17 14
974 377.21 temperature 20 1440 > th dose dependent rect. 13 14