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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0418700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.3 (0.0628) R2 : 0.168
β1 : 0.911 (0.228) R2dD : 0.0307 R2D : -0.0116
β2 : 1.02 (0.33) R2dC : 0.0883 R2C : -0.219
β3 : -1.75 (0.304) R2dE : 0.306 R2E : -0.0283
β4 : -4.61 (1.35) R2dD*C : 0.126 R2D*C : -0.112
β5 : 4.24 (1.32) R2dD*E : 0.112 R2D*E : -0.13
γ1 : 0.7 (0.133) R2dN8 : 0.0687 R2N8 : 0.021
σ : 1.17
deviance : 616.73
__
_____
C
peak time of C : 11.8
E
wheather : wind
threshold : 3.457
memory length : 665
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5
open length of G : 3.76

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
616.73 1.17 4.3 0.911 1.02 -1.75 -4.61 4.24 0.7 11.8 3.457 665 5 3.76
632.85 1.17 4.31 0.712 1.28 -1.82 -1.29 -- 0.715 12.4 3.686 686 5.57 2.13
644.01 1.18 4.18 1.02 1.03 -1.76 -- 0.623 1 12.8 3.9 630 5.18 4.6
629.46 1.17 4.28 0.926 1.26 -1.9 -- -- 0.746 12.6 3.9 662 5.27 3.93
644.86 1.18 4.34 0.934 -- -1.54 -- 0.555 0.679 -- 3.801 2041 5.17 4.83
675.92 1.22 4.37 0.797 0.657 -- 0.783 -- 0.572 0.379 -- -- -- --
678.46 1.22 4.37 0.765 0.657 -- -- -- 0.567 0.637 -- -- -- --
640.98 1.18 4.33 0.992 -- -1.6 -- -- 0.709 -- 3.754 2010 5.68 4.81
649.64 1.19 4.34 -- 1.35 -1.95 -- -- 0.617 12.6 3.898 667 5.22 3.76
705.49 1.24 4.36 0.789 -- -- -- -- 0.578 -- -- -- -- --
693.91 1.23 4.39 -- 0.669 -- -- -- 0.482 0.692 -- -- -- --
659.98 1.2 4.36 -- -- -1.45 -- -- 0.591 -- 3.799 1992 6.93 2.93
721.9 1.25 4.38 -- -- -- -- -- 0.491 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 626.96 wind 3 720 < th dose independent rect. 5 4
2 627.46 wind 3 720 < th dose independent rect. 5 2
5 629.17 wind 5 720 < th dose independent rect. 23 9
8 630.46 humidity 80 14400 < th dose dependent rect. 6 1
10 630.64 wind 5 720 < th dose independent rect. 20 14
11 631.22 wind 9 14400 > th dose dependent rect. 12 1
12 631.66 wind 5 720 < th dose dependent rect. 5 4
14 631.95 wind 7 1440 > th dose independent rect. 22 3
16 632.07 wind 7 1440 > th dose dependent rect. 22 3
17 632.22 wind 3 720 < th dose independent rect. 3 14
20 632.34 wind 7 1440 < th dose independent rect. 22 3
24 632.51 wind 7 1440 < th dose independent rect. 21 6
26 632.66 humidity 80 14400 > th dose independent rect. 5 2
34 632.93 wind 3 1440 < th dose independent rect. 7 1
35 632.95 humidity 80 14400 < th dose independent rect. 6 1
40 633.29 wind 3 1440 > th dose independent rect. 7 1
43 633.46 wind 5 720 < th dose dependent rect. 5 2
52 633.94 wind 5 720 > th dose independent rect. 23 11
54 634.00 wind 3 720 > th dose dependent rect. 24 10
59 634.12 humidity 80 14400 > th dose independent rect. 4 4
61 634.18 wind 3 720 > th dose dependent rect. 4 5
62 634.24 humidity 80 14400 < th dose independent rect. 4 4
63 634.25 wind 1 1440 > th dose dependent rect. 7 1
77 634.59 wind 5 1440 < th dose dependent rect. 7 1
150 636.11 wind 5 720 < th dose independent sin 8 NA
218 637.56 wind 3 43200 < th dose independent rect. 12 1
225 637.73 atmosphere 995 720 > th dose dependent rect. 17 2
244 638.07 wind 3 720 < th dose independent sin 3 NA
245 638.07 wind 1 720 < th dose independent rect. 14 9
246 638.08 wind 3 720 > th dose dependent sin 8 NA
254 638.21 atmosphere 1000 720 > th dose independent rect. 17 12
260 638.35 wind 5 720 > th dose independent sin 8 NA
274 638.47 wind 1 720 < th dose dependent rect. 14 7
275 638.48 atmosphere 1000 90 > th dose independent rect. 17 12
277 638.50 wind 9 720 < th dose dependent rect. 21 19
310 639.05 humidity 80 14400 < th dose dependent rect. 24 8
336 639.34 wind 5 720 < th dose dependent rect. 3 14
357 639.59 wind 9 1440 > th dose independent rect. 18 2
358 639.59 atmosphere 1000 90 > th dose independent rect. 17 21
360 639.60 wind 3 720 < th dose dependent rect. 5 18
370 639.71 atmosphere 1000 30 > th dose independent rect. 18 15
395 639.96 wind 9 4320 > th dose independent rect. 11 2
418 640.26 wind 9 1440 > th dose dependent rect. 18 2
441 640.53 atmosphere 1000 270 < th dose independent rect. 20 19
446 640.60 atmosphere 1000 270 < th dose independent rect. 20 17
456 640.70 wind 3 43200 > th dose independent rect. 12 1
478 640.94 wind 3 43200 < th dose dependent rect. 12 1
481 640.98 humidity 90 14400 < th dose dependent rect. 1 3
492 641.06 wind 9 43200 > th dose independent rect. 15 1
493 641.06 atmosphere 1000 720 > th dose independent rect. 17 6
509 641.13 atmosphere 1000 720 > th dose independent rect. 17 10
513 641.17 wind 9 4320 < th dose independent rect. 11 2
554 641.43 wind 9 1440 > th dose dependent rect. 21 21
567 641.49 atmosphere 1000 90 < th dose independent rect. 21 11
601 641.68 wind 5 1440 < th dose independent rect. 1 1
612 641.73 atmosphere 1000 720 > th dose independent rect. 17 8
616 641.74 atmosphere 1000 10 > th dose independent sin 9 NA
618 641.75 wind 7 720 < th dose dependent sin 5 NA
631 641.81 atmosphere 1000 720 < th dose independent rect. 21 2
660 641.95 atmosphere 1000 10 < th dose independent rect. 22 11
681 642.07 temperature 20 30 > th dose dependent rect. 23 5
710 642.22 wind 9 1440 > th dose dependent rect. 1 17
737 642.30 humidity 80 14400 > th dose independent rect. 24 3
754 642.35 wind 1 43200 < th dose dependent rect. 9 4
755 642.36 atmosphere 1000 30 < th dose independent sin 9 NA
759 642.37 wind 9 1440 > th dose dependent rect. 9 9
770 642.40 wind 9 1440 > th dose independent sin 9 NA
785 642.45 wind 3 1440 > th dose independent rect. 4 12
806 642.55 humidity 80 14400 > th dose independent rect. 24 1
834 642.65 wind 9 1440 > th dose dependent rect. 19 23
838 642.68 wind 9 1440 > th dose dependent rect. 19 21
874 642.79 atmosphere 1000 90 > th dose independent rect. 15 23
897 642.85 wind 9 1440 > th dose dependent sin 9 NA
899 642.86 atmosphere 1000 10 < th dose independent rect. 22 14
923 642.93 wind 9 4320 < th dose independent rect. 8 5
928 642.95 wind 9 1440 > th dose dependent rect. 15 1
937 642.98 wind 9 1440 > th dose independent rect. 21 19
963 643.04 wind 9 1440 < th dose independent rect. 21 19
975 643.09 wind 9 1440 > th dose independent rect. 19 21