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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0418600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.88 (0.0628) R2 : 0.166
β1 : 0.581 (0.231) R2dD : 0.011 R2D : -0.0174
β2 : 1.92 (0.322) R2dC : 0.303 R2C : -0.372
β3 : 2.87 (0.392) R2dE : 0.459 R2E : -0.223
β4 : -2.81 (0.568) R2dD*C : 0.0465 R2D*C : 0.0186
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.492 (0.135) R2dN8 : 0.0337 R2N8 : 0.0281
σ : 1.17
deviance : 634.03
__
_____
C
peak time of C : 11.7
E
wheather : atmosphere
threshold : 992.2
memory length : 711
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.3
open length of G : 1.75

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
629.26 1.18 5.89 0.646 1.69 2.76 -5.54 -4 0.465 11.6 994.8 719 17.1 1.92
634.03 1.17 5.88 0.581 1.92 2.87 -2.81 -- 0.492 11.7 992.2 711 17.3 1.75
645.22 1.18 5.92 0.45 1.92 2.57 -- 2.74 0.476 11.9 987.8 704 17.4 1.57
665.98 1.2 5.89 0.425 2 2.75 -- -- 0.498 11.9 988.7 703 17.5 1.53
704.23 1.24 5.91 0.472 -- 1.22 -- 3.1 0.567 -- 982 3527 18.2 2.26
702.3 1.24 5.9 0.529 0.165 -- 2.63 -- 0.584 23.1 -- -- -- --
729.85 1.27 5.91 0.415 0.235 -- -- -- 0.57 2.55 -- -- -- --
706.47 1.24 5.88 0.616 -- 1.04 -- -- 0.581 -- 982.6 3975 17.9 1.97
670.69 1.21 5.89 -- 2 2.72 -- -- 0.466 11.9 988.3 703 17.5 1.51
733.1 1.27 5.91 0.425 -- -- -- -- 0.576 -- -- -- -- --
734.4 1.27 5.92 -- 0.243 -- -- -- 0.524 2.57 -- -- -- --
711.27 1.24 5.87 -- -- 1.18 -- -- 0.542 -- 982.7 4037 17 2
737.87 1.27 5.92 -- -- -- -- -- 0.529 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 629.84 atmosphere 995.0 720 > th dose dependent rect. 17 2
2 631.17 wind 3.0 720 < th dose independent rect. 5 2
3 631.70 radiation 1.0 720 > th dose independent rect. 18 13
4 633.68 temperature 10.0 720 > th dose dependent rect. 5 2
5 634.02 temperature 20.0 720 > th dose dependent rect. 6 1
7 635.45 radiation 1.0 720 > th dose independent rect. 5 2
9 635.95 atmosphere 1005.0 720 > th dose independent rect. 17 2
23 639.23 wind 7.0 720 < th dose dependent rect. 5 2
24 640.00 wind 7.0 720 < th dose independent rect. 19 16
28 641.31 humidity 90.0 720 < th dose independent rect. 6 1
33 644.35 wind 3.0 720 < th dose independent rect. 5 19
35 644.64 atmosphere 995.0 90 > th dose dependent rect. 17 12
36 644.75 wind 9.0 720 < th dose independent rect. 19 22
37 644.91 wind 5.0 720 < th dose dependent rect. 5 19
38 645.03 wind 1.0 720 < th dose independent rect. 14 9
40 645.98 radiation 1.0 720 < th dose dependent rect. 24 7
42 646.34 wind 3.0 720 < th dose independent rect. 4 13
43 646.48 radiation 1.0 720 < th dose independent rect. 24 7
50 647.23 radiation 10.0 720 < th dose independent rect. 17 2
57 647.89 temperature 25.0 720 > th dose independent rect. 6 1
61 648.32 wind 3.0 720 < th dose independent rect. 4 16
74 649.36 temperature 10.0 90 > th dose dependent rect. 5 12
76 649.39 temperature 20.0 30 > th dose dependent rect. 18 11
77 649.50 atmosphere 1000.0 90 > th dose independent rect. 17 12
84 650.38 wind 5.0 720 < th dose dependent rect. 4 13
94 651.19 temperature 25.0 30 > th dose independent rect. 18 11
95 651.19 wind 5.0 720 < th dose independent rect. 21 19
103 651.62 wind 9.0 720 < th dose dependent rect. 21 20
119 652.20 wind 5.0 720 < th dose independent rect. 23 9
127 652.43 radiation 20.0 720 < th dose dependent rect. 17 2
132 652.57 wind 1.0 720 < th dose independent rect. 11 13
152 653.27 radiation 1.0 30 > th dose independent rect. 12 23
168 653.62 precipitation 0.1 720 < th dose independent rect. 19 22
169 653.62 precipitation 0.1 720 < th dose dependent rect. 19 22
191 654.22 wind 1.0 720 < th dose dependent rect. 14 7
192 654.28 radiation 1.0 30 < th dose independent rect. 4 21
195 654.37 wind 5.0 720 < th dose independent rect. 4 5
207 654.72 temperature 30.0 90 < th dose independent rect. 17 12
225 655.65 humidity 50.0 720 > th dose independent rect. 17 2
228 655.70 wind 7.0 1440 > th dose independent rect. 22 3
233 655.84 wind 7.0 1440 > th dose dependent rect. 22 3
236 655.85 radiation 1.0 30 < th dose dependent rect. 4 21
244 656.10 wind 5.0 720 < th dose independent rect. 21 12
246 656.12 wind 3.0 720 > th dose independent rect. 4 17
263 656.57 wind 9.0 1440 > th dose dependent rect. 21 21
267 656.66 wind 7.0 1440 < th dose independent rect. 22 3
272 656.79 humidity 60.0 90 > th dose independent rect. 17 12
273 656.81 wind 7.0 720 < th dose dependent rect. 5 4
290 657.11 wind 3.0 720 > th dose independent rect. 4 15
302 657.39 wind 9.0 1440 > th dose dependent rect. 1 17
309 657.49 wind 9.0 1440 > th dose dependent rect. 9 9
317 657.50 radiation 1.0 30 < th dose independent rect. 16 16
324 657.55 radiation 20.0 720 < th dose independent rect. 5 2
350 657.92 wind 9.0 1440 > th dose independent rect. 19 16
366 658.08 wind 9.0 1440 > th dose dependent sin 1 NA
380 658.17 wind 9.0 1440 > th dose dependent rect. 21 23
389 658.23 wind 9.0 1440 > th dose dependent sin 9 NA
401 658.34 radiation 10.0 30 < th dose dependent rect. 18 15
402 658.35 precipitation 0.1 720 < th dose independent rect. 17 2
403 658.35 precipitation 0.1 720 < th dose dependent rect. 17 2
404 658.38 wind 9.0 1440 > th dose independent sin 9 NA
410 658.44 radiation 10.0 90 < th dose dependent rect. 17 12
420 658.57 wind 3.0 720 < th dose independent sin 0 NA
421 658.57 precipitation 0.1 720 < th dose independent rect. 5 2
422 658.57 precipitation 0.1 720 < th dose dependent rect. 5 2
428 658.63 wind 3.0 30 > th dose independent rect. 1 11
440 658.76 wind 5.0 720 < th dose independent sin 7 NA
477 659.15 wind 9.0 1440 > th dose dependent rect. 19 23
491 659.22 wind 3.0 720 > th dose dependent rect. 18 18
494 659.26 wind 1.0 720 > th dose independent rect. 17 2
511 659.45 wind 5.0 720 > th dose dependent rect. 21 14
521 659.56 temperature 15.0 720 > th dose independent rect. 19 22
525 659.57 wind 3.0 720 < th dose dependent sin 21 NA
529 659.58 wind 9.0 1440 > th dose dependent rect. 16 23
546 659.69 wind 1.0 30 > th dose dependent rect. 18 18
547 659.71 wind 9.0 1440 > th dose independent rect. 21 20
574 659.90 wind 9.0 1440 < th dose independent rect. 5 12
602 660.20 humidity 50.0 720 > th dose independent rect. 7 22
605 660.23 humidity 70.0 720 > th dose independent rect. 5 2
608 660.25 temperature 10.0 1440 > th dose independent rect. 19 11
611 660.25 temperature 30.0 1440 < th dose independent rect. 19 11
615 660.25 humidity 50.0 1440 > th dose independent rect. 19 11
617 660.25 atmosphere 995.0 1440 > th dose independent rect. 19 11
618 660.25 radiation 20.0 1440 < th dose independent rect. 19 11
627 660.25 temperature 10.0 1440 > th dose independent rect. 6 13
642 660.36 temperature 10.0 720 > th dose independent rect. 5 2
643 660.36 temperature 30.0 720 < th dose independent rect. 5 2
644 660.36 humidity 50.0 720 > th dose independent rect. 5 2
646 660.36 atmosphere 995.0 720 > th dose independent rect. 5 2
647 660.36 atmosphere 1015.0 720 < th dose independent rect. 5 2
649 660.36 temperature 10.0 720 > th dose independent rect. 7 22
656 660.44 wind 9.0 1440 > th dose dependent rect. 13 23
666 660.49 wind 9.0 1440 > th dose dependent no NA NA
668 660.49 wind 9.0 1440 > th dose dependent rect. 9 17
684 660.49 wind 9.0 1440 > th dose dependent rect. 1 22
710 660.55 wind 9.0 1440 > th dose dependent rect. 9 14
737 660.60 wind 9.0 1440 < th dose independent rect. 9 8
744 660.67 wind 9.0 1440 < th dose independent sin 9 NA
748 660.68 temperature 10.0 720 > th dose independent rect. 17 2
749 660.68 atmosphere 1015.0 720 < th dose independent rect. 17 2
808 660.95 wind 3.0 720 < th dose dependent rect. 8 16
813 661.01 wind 9.0 1440 > th dose independent rect. 1 16
820 661.05 wind 9.0 1440 > th dose independent sin 3 NA
824 661.06 wind 1.0 720 > th dose dependent rect. 15 21
827 661.08 wind 9.0 1440 < th dose independent sin 3 NA
832 661.14 wind 9.0 1440 > th dose independent rect. 19 22
848 661.21 wind 9.0 1440 > th dose independent rect. 9 8
893 661.45 wind 9.0 720 < th dose independent rect. 5 19
907 661.50 atmosphere 995.0 720 > th dose independent rect. 7 22