Os07g0415200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal L23 and L15e, core domain containing protein.
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Os07g0415200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal L23 and L15e, core domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.1 | 0.444 | 9.55 | 1.59 | 2.46 | 0.887 | 0.471 | 1.28 | 0.00246 | 19.1 | 7.987 | 128 | -- | -- |
| 91.85 | 0.446 | 9.55 | 1.63 | 2.44 | 0.789 | 0.222 | -- | 0.0164 | 19.1 | 5.33 | 160 | -- | -- |
| 89.66 | 0.441 | 9.55 | 1.58 | 2.47 | 0.879 | -- | 1.17 | 0.00524 | 19.1 | 7.23 | 127 | -- | -- |
| 91.95 | 0.447 | 9.55 | 1.6 | 2.43 | 0.846 | -- | -- | 0.00407 | 19.2 | 2.651 | 160 | -- | -- |
| 182.54 | 0.629 | 9.54 | 1.48 | -- | 2.59 | -- | 1.16 | -0.275 | -- | -21.92 | 744 | -- | -- |
| 100.94 | 0.471 | 9.54 | 1.62 | 2.51 | -- | 0.414 | -- | 0.0467 | 18.5 | -- | -- | -- | -- |
| 101.36 | 0.471 | 9.54 | 1.61 | 2.51 | -- | -- | -- | 0.048 | 18.5 | -- | -- | -- | -- |
| 180.32 | 0.625 | 9.55 | 1.41 | -- | 2.62 | -- | -- | -0.261 | -- | -15.41 | 750 | -- | -- |
| 159.53 | 0.588 | 9.58 | -- | 2.4 | 0.787 | -- | -- | -0.16 | 19.2 | 6.927 | 179 | -- | -- |
| 429.33 | 0.968 | 9.49 | 1.55 | -- | -- | -- | -- | -0.00465 | -- | -- | -- | -- | -- |
| 170.07 | 0.61 | 9.58 | -- | 2.49 | -- | -- | -- | -0.132 | 18.5 | -- | -- | -- | -- |
| 232.86 | 0.711 | 9.58 | -- | -- | 2.67 | -- | -- | -0.423 | -- | -10.24 | 754 | -- | -- |
| 492.77 | 1.04 | 9.53 | -- | -- | -- | -- | -- | -0.177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.36 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 5 | 81.79 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 7 | 82.27 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 22 | 6 |
| 31 | 83.14 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 42 | 83.41 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 45 | 83.52 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 47 | 83.56 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 18 |
| 49 | 83.58 | temperature | 20.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 50 | 83.61 | temperature | 20.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 53 | 83.63 | temperature | 20.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 54 | 83.65 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 59 | 83.77 | wind | 7.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 61 | 83.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 23 |
| 63 | 83.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 72 | 83.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 73 | 83.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 78 | 84.02 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 4 | 18 |
| 79 | 84.06 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 81 | 84.06 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 90 | 84.14 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 92 | 84.15 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 93 | 84.15 | wind | 7.0 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 97 | 84.20 | wind | 5.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 106 | 84.27 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 107 | 84.28 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 18 |
| 116 | 84.36 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 18 |
| 123 | 84.41 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 22 | 6 |
| 127 | 84.45 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 139 | 84.49 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 8 |
| 154 | 84.66 | wind | 9.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 156 | 84.67 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 166 | 84.72 | humidity | 80.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 186 | 84.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 188 | 84.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 190 | 84.81 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 191 | 84.82 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 7 |
| 218 | 84.97 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 222 | 84.98 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 18 |
| 224 | 84.99 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 229 | 85.03 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 231 | 85.03 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 232 | 85.03 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 235 | 85.03 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 236 | 85.03 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 238 | 85.03 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 241 | 85.03 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 245 | 85.04 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 251 | 85.07 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 253 | 85.07 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 254 | 85.07 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 256 | 85.07 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 257 | 85.07 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 258 | 85.07 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 260 | 85.08 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 262 | 85.08 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 5 |
| 264 | 85.08 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 268 | 85.10 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 297 | 85.23 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 298 | 85.23 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 299 | 85.24 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 8 |
| 304 | 85.26 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 309 | 85.27 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 326 | 85.28 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 334 | 85.29 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 20 | 7 |
| 335 | 85.30 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 344 | 85.34 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 367 | 85.42 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 22 |
| 368 | 85.43 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 18 |
| 397 | 85.51 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 406 | 85.54 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 425 | 85.58 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 8 |
| 427 | 85.58 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 433 | 85.59 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 436 | 85.60 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 22 | 6 |
| 452 | 85.62 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 468 | 85.69 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 478 | 85.72 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 488 | 85.73 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 498 | 85.76 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 507 | 85.80 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 9 |
| 580 | 85.98 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 2 | 13 |
| 584 | 85.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 6 |
| 585 | 85.99 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 588 | 85.99 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 589 | 85.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 6 |
| 595 | 86.01 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 609 | 86.07 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 641 | 86.14 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 651 | 86.16 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 665 | 86.19 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 666 | 86.19 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 667 | 86.19 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 668 | 86.19 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 669 | 86.19 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 674 | 86.19 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 675 | 86.19 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 678 | 86.19 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 683 | 86.19 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 10 |
| 713 | 86.25 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 715 | 86.25 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 716 | 86.25 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 718 | 86.25 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 719 | 86.25 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 725 | 86.26 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 795 | 86.38 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 860 | 86.47 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 861 | 86.48 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 8 |
| 864 | 86.48 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 889 | 86.54 | wind | 7.0 | 90 | < th | dose independent | rect. | 22 | 6 |
| 945 | 86.62 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 18 |
| 965 | 86.66 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 966 | 86.67 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 22 | 3 |
| 974 | 86.68 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 22 | 6 |
| 975 | 86.69 | temperature | 10.0 | 90 | > th | dose independent | rect. | 22 | 6 |
| 976 | 86.69 | temperature | 30.0 | 90 | < th | dose independent | rect. | 22 | 6 |
| 977 | 86.69 | humidity | 50.0 | 90 | > th | dose independent | rect. | 22 | 6 |
| 981 | 86.69 | radiation | 1.0 | 90 | < th | dose independent | rect. | 22 | 6 |
| 989 | 86.69 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 21 |
| 990 | 86.69 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 22 | 6 |