Os07g0413300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1409 domain containing protein.
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Os07g0413300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1409 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.88 | 0.406 | 8.58 | -0.934 | 0.708 | -0.465 | -0.414 | 1.49 | -0.579 | 7.59 | 10 | 1443 | -- | -- |
| 79.57 | 0.415 | 8.58 | -0.932 | 0.71 | -0.463 | -0.396 | -- | -0.577 | 7.63 | 9.998 | 1466 | -- | -- |
| 76.34 | 0.407 | 8.58 | -0.934 | 0.708 | -0.465 | -- | 1.5 | -0.579 | 7.59 | 10 | 1456 | -- | -- |
| 79.97 | 0.416 | 8.58 | -0.93 | 0.708 | -0.464 | -- | -- | -0.577 | 7.76 | 9.994 | 1463 | -- | -- |
| 102.82 | 0.472 | 8.58 | -0.93 | -- | -0.468 | -- | 1.58 | -0.562 | -- | 9.992 | 1488 | -- | -- |
| 85.25 | 0.433 | 8.58 | -0.957 | 0.713 | -- | -0.422 | -- | -0.504 | 7.63 | -- | -- | -- | -- |
| 85.72 | 0.434 | 8.58 | -0.966 | 0.711 | -- | -- | -- | -0.503 | 7.75 | -- | -- | -- | -- |
| 105.86 | 0.479 | 8.62 | -0.892 | -- | -0.502 | -- | -- | -0.553 | -- | 9.941 | 1536 | -- | -- |
| 97.31 | 0.459 | 8.58 | -- | 0.71 | -0.464 | -- | -- | -0.577 | 7.75 | 9.996 | 7363 | -- | -- |
| 113.04 | 0.497 | 8.6 | -0.957 | -- | -- | -- | -- | -0.493 | -- | -- | -- | -- | -- |
| 110.32 | 0.491 | 8.55 | -- | 0.704 | -- | -- | -- | -0.395 | 7.85 | -- | -- | -- | -- |
| 123.59 | 0.518 | 8.58 | -- | -- | -0.464 | -- | -- | -0.577 | -- | 9.949 | 47520 | -- | -- |
| 137.21 | 0.547 | 8.57 | -- | -- | -- | -- | -- | -0.387 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.36 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 22 | 11 |
| 3 | 73.58 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 4 | 73.70 | temperature | 25.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 8 | 73.85 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 19 | 74.40 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 20 | 74.42 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 21 | 74.43 | temperature | 20.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 26 | 74.56 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 34 | 74.65 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 35 | 74.69 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 38 | 74.74 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 20 | 6 |
| 57 | 74.88 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 60 | 74.93 | radiation | 40.0 | 720 | < th | dose independent | rect. | 9 | 9 |
| 63 | 74.98 | radiation | 30.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 70 | 75.03 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 72 | 75.06 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 75 | 75.07 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 80 | 75.08 | temperature | 25.0 | 270 | < th | dose independent | rect. | 21 | 12 |
| 86 | 75.09 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 14 | 18 |
| 94 | 75.13 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 95 | 75.13 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 100 | 75.17 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 120 | 75.26 | radiation | 40.0 | 720 | < th | dose independent | rect. | 2 | 19 |
| 126 | 75.28 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 138 | 75.32 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 140 | 75.33 | radiation | 10.0 | 1440 | < th | dose independent | sin | 20 | NA |
| 141 | 75.33 | radiation | 40.0 | 720 | < th | dose independent | sin | 23 | NA |
| 160 | 75.38 | radiation | 40.0 | 720 | < th | dose independent | rect. | 6 | 15 |
| 164 | 75.39 | radiation | 40.0 | 720 | < th | dose independent | rect. | 24 | 14 |
| 168 | 75.41 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 173 | 75.43 | wind | 7.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 177 | 75.43 | radiation | 10.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 178 | 75.44 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 189 | 75.48 | wind | 7.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 198 | 75.51 | radiation | 40.0 | 720 | < th | dose independent | rect. | 24 | 21 |
| 209 | 75.53 | radiation | 40.0 | 720 | < th | dose independent | rect. | 24 | 16 |
| 210 | 75.53 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 237 | 75.57 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 275 | 75.65 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 285 | 75.67 | temperature | 25.0 | 270 | < th | dose independent | sin | 9 | NA |
| 291 | 75.68 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 306 | 75.68 | radiation | 40.0 | 720 | < th | dose independent | rect. | 24 | 18 |
| 343 | 75.71 | radiation | 40.0 | 720 | < th | dose independent | rect. | 4 | 17 |
| 347 | 75.71 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 375 | 75.74 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 401 | 75.76 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 425 | 75.77 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 428 | 75.78 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 429 | 75.78 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 443 | 75.80 | radiation | 20.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 478 | 75.81 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 484 | 75.81 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 505 | 75.84 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 3 | 15 |
| 513 | 75.85 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 5 |
| 515 | 75.85 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 561 | 75.87 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 3 | 18 |
| 609 | 75.89 | radiation | 10.0 | 1440 | < th | dose independent | no | NA | NA |
| 682 | 75.93 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 690 | 75.93 | radiation | 40.0 | 720 | < th | dose independent | rect. | 15 | 23 |
| 704 | 75.94 | radiation | 40.0 | 720 | < th | dose independent | rect. | 17 | 23 |
| 715 | 75.96 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 737 | 75.96 | radiation | 20.0 | 4320 | > th | dose dependent | sin | 12 | NA |
| 741 | 75.96 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 766 | 75.97 | radiation | 40.0 | 720 | < th | dose independent | rect. | 17 | 21 |
| 770 | 75.97 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 14 | 18 |
| 778 | 75.98 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 798 | 75.99 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 809 | 75.99 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 810 | 75.99 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 819 | 76.00 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 832 | 76.00 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 16 | 14 |
| 845 | 76.00 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 884 | 76.02 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 16 | 5 |
| 922 | 76.04 | temperature | 25.0 | 270 | > th | dose independent | rect. | 24 | 8 |
| 926 | 76.04 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 934 | 76.05 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 951 | 76.06 | radiation | 40.0 | 720 | < th | dose independent | rect. | 11 | 18 |
| 975 | 76.07 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 985 | 76.08 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 1 |