Os07g0409900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os07g0409900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.13 | 0.316 | 10.2 | 0.551 | 0.917 | -1.35 | -0.482 | 1.27 | 0.337 | 23.6 | 22.9 | 821 | -- | -- |
| 46.85 | 0.319 | 10.1 | 0.675 | 0.916 | -1.62 | -0.663 | -- | 0.351 | 23.4 | 22.67 | 981 | -- | -- |
| 46.01 | 0.316 | 10.2 | 0.525 | 0.923 | -1.31 | -- | 1.56 | 0.341 | 23.5 | 22.9 | 826 | -- | -- |
| 48.96 | 0.326 | 10.1 | 0.703 | 0.909 | -1.65 | -- | -- | 0.367 | 23.4 | 22.54 | 927 | -- | -- |
| 94.21 | 0.452 | 10.2 | 0.211 | -- | -1.65 | -- | 2.27 | 0.127 | -- | 26.98 | 853 | -- | -- |
| 76.89 | 0.411 | 10.1 | 1.11 | 1.07 | -- | -0.833 | -- | 0.606 | 23.5 | -- | -- | -- | -- |
| 79.87 | 0.419 | 10.1 | 1.14 | 1.07 | -- | -- | -- | 0.609 | 23.4 | -- | -- | -- | -- |
| 97.4 | 0.46 | 10.1 | 0.617 | -- | -2.08 | -- | -- | 0.306 | -- | 22.7 | 842 | -- | -- |
| 54.3 | 0.343 | 10.2 | -- | 0.99 | -1.92 | -- | -- | 0.278 | 23.2 | 20.7 | 2431 | -- | -- |
| 151.8 | 0.576 | 10.1 | 1.17 | -- | -- | -- | -- | 0.621 | -- | -- | -- | -- | -- |
| 114.36 | 0.5 | 10.1 | -- | 1.08 | -- | -- | -- | 0.482 | 23.5 | -- | -- | -- | -- |
| 106.1 | 0.48 | 10.2 | -- | -- | -2.4 | -- | -- | 0.217 | -- | 22.66 | 849 | -- | -- |
| 188.04 | 0.64 | 10.1 | -- | -- | -- | -- | -- | 0.49 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.06 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 8 | 44.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 10 | 44.96 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 18 |
| 12 | 45.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 18 |
| 25 | 45.36 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 18 |
| 50 | 45.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 73 | 45.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 14 |
| 78 | 45.86 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 80 | 45.87 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 102 | 46.00 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 104 | 46.00 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 108 | 46.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 119 | 46.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 129 | 46.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 9 |
| 162 | 46.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 9 |
| 174 | 46.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 11 |
| 333 | 46.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 384 | 46.82 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 434 | 46.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 437 | 46.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 3 |
| 489 | 47.04 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 15 |
| 504 | 47.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 682 | 47.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 7 |
| 986 | 47.95 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 997 | 47.97 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |