Os07g0409200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Xylulose kinase (EC 2.7.1.17).
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Os07g0409200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Xylulose kinase (EC 2.7.1.17).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.35 | 0.32 | 11.8 | -1.36 | 1.12 | -0.411 | -0.55 | -0.623 | -0.576 | 22 | 1004 | 5711 | -- | -- |
| 46.72 | 0.318 | 11.8 | -1.39 | 1.12 | -0.428 | -0.553 | -- | -0.572 | 22 | 1004 | 5590 | -- | -- |
| 47.49 | 0.321 | 11.8 | -1.33 | 1.12 | -0.402 | -- | -0.643 | -0.577 | 22 | 1004 | 6091 | -- | -- |
| 47.88 | 0.322 | 11.8 | -1.38 | 1.12 | -0.437 | -- | -- | -0.574 | 22 | 1004 | 5711 | -- | -- |
| 122.45 | 0.515 | 11.8 | -1.28 | -- | -0.384 | -- | -0.976 | -0.585 | -- | 1004 | 6371 | -- | -- |
| 50.2 | 0.332 | 11.8 | -1.36 | 1.12 | -- | -0.523 | -- | -0.628 | 21.9 | -- | -- | -- | -- |
| 51.25 | 0.335 | 11.8 | -1.34 | 1.12 | -- | -- | -- | -0.627 | 22 | -- | -- | -- | -- |
| 123.22 | 0.517 | 11.8 | -1.36 | -- | -0.458 | -- | -- | -0.566 | -- | 1004 | 6349 | -- | -- |
| 96.72 | 0.458 | 11.8 | -- | 1.12 | -0.285 | -- | -- | -0.439 | 21.9 | 1004 | 5592 | -- | -- |
| 126.87 | 0.526 | 11.8 | -1.32 | -- | -- | -- | -- | -0.627 | -- | -- | -- | -- | -- |
| 98.26 | 0.464 | 11.8 | -- | 1.12 | -- | -- | -- | -0.478 | 21.9 | -- | -- | -- | -- |
| 171.37 | 0.61 | 11.8 | -- | -- | -0.272 | -- | -- | -0.459 | -- | 1004 | 6355 | -- | -- |
| 172.99 | 0.614 | 11.8 | -- | -- | -- | -- | -- | -0.48 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.14 | humidity | 80 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 4 | 45.28 | humidity | 80 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 10 | 45.50 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 19 | 10 |
| 18 | 45.79 | humidity | 80 | 4320 | < th | dose independent | rect. | 20 | 9 |
| 32 | 45.95 | atmosphere | 1005 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 33 | 45.96 | atmosphere | 1005 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 38 | 46.00 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 44 | 46.00 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 53 | 46.03 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 13 |
| 62 | 46.05 | humidity | 60 | 270 | > th | dose dependent | rect. | 19 | 10 |
| 63 | 46.06 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 75 | 46.09 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 79 | 46.10 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 89 | 46.12 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 102 | 46.16 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 17 | 7 |
| 113 | 46.18 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 7 |
| 210 | 46.30 | atmosphere | 1005 | 1440 | < th | dose dependent | sin | 0 | NA |
| 246 | 46.33 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 249 | 46.33 | humidity | 80 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 280 | 46.35 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 341 | 46.37 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 417 | 46.41 | atmosphere | 995 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 421 | 46.41 | atmosphere | 995 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 437 | 46.42 | atmosphere | 995 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 468 | 46.43 | humidity | 80 | 4320 | < th | dose dependent | rect. | 20 | 9 |
| 562 | 46.48 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 12 | 17 |
| 582 | 46.49 | humidity | 90 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 600 | 46.50 | humidity | 90 | 4320 | < th | dose dependent | rect. | 22 | 3 |
| 638 | 46.52 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 8 |
| 662 | 46.53 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 9 | 20 |
| 716 | 46.55 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 799 | 46.58 | atmosphere | 1005 | 1440 | < th | dose dependent | no | NA | NA |
| 812 | 46.58 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 14 | 14 |
| 816 | 46.58 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 16 | 18 |
| 832 | 46.59 | wind | 5 | 4320 | > th | dose independent | rect. | 14 | 17 |
| 854 | 46.60 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 878 | 46.60 | atmosphere | 1005 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 907 | 46.61 | atmosphere | 1005 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 949 | 46.63 | humidity | 90 | 90 | < th | dose dependent | rect. | 21 | 11 |
| 953 | 46.63 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 14 | 18 |
| 975 | 46.64 | atmosphere | 995 | 720 | > th | dose independent | rect. | 17 | 14 |
| 977 | 46.64 | wind | 5 | 4320 | < th | dose independent | rect. | 14 | 17 |
| 996 | 46.65 | humidity | 80 | 720 | > th | dose independent | rect. | 20 | 9 |