Os07g0408400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os07g0408400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.97 | 0.605 | 6.41 | -1.46 | 0.362 | -1.73 | -0.0105 | -0.401 | 0.686 | 19.1 | 22.66 | 668 | -- | -- |
| 166.15 | 0.6 | 6.41 | -1.49 | 0.369 | -1.63 | 0.0878 | -- | 0.685 | 19.1 | 22.8 | 666 | -- | -- |
| 165.97 | 0.6 | 6.41 | -1.46 | 0.362 | -1.72 | -- | -0.389 | 0.685 | 19.1 | 22.71 | 666 | -- | -- |
| 166.15 | 0.6 | 6.42 | -1.5 | 0.364 | -1.64 | -- | -- | 0.68 | 19.1 | 22.76 | 666 | -- | -- |
| 172.59 | 0.612 | 6.4 | -1.47 | -- | -1.87 | -- | -0.565 | 0.66 | -- | 22.75 | 633 | -- | -- |
| 198.51 | 0.661 | 6.37 | -1.09 | 0.503 | -- | -0.126 | -- | 0.924 | 20 | -- | -- | -- | -- |
| 198.56 | 0.66 | 6.37 | -1.08 | 0.504 | -- | -- | -- | 0.924 | 20 | -- | -- | -- | -- |
| 172.95 | 0.613 | 6.41 | -1.54 | -- | -1.77 | -- | -- | 0.653 | -- | 22.8 | 642 | -- | -- |
| 218.22 | 0.688 | 6.37 | -- | 0.41 | -0.959 | -- | -- | 0.914 | 19.6 | 23 | 660 | -- | -- |
| 212.38 | 0.681 | 6.35 | -1.09 | -- | -- | -- | -- | 0.917 | -- | -- | -- | -- | -- |
| 229.53 | 0.709 | 6.34 | -- | 0.511 | -- | -- | -- | 1.04 | 19.8 | -- | -- | -- | -- |
| 227.75 | 0.703 | 6.36 | -- | -- | -1.04 | -- | -- | 0.905 | -- | 23 | 612 | -- | -- |
| 243.67 | 0.729 | 6.33 | -- | -- | -- | -- | -- | 1.04 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 15 |
| 28 | 164.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 15 |
| 37 | 164.94 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 71 | 165.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 72 | 165.77 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 86 | 166.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 103 | 166.43 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 18 |
| 113 | 166.64 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 160 | 167.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 12 |
| 178 | 167.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 181 | 167.42 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 17 |
| 182 | 167.42 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 190 | 167.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 19 |
| 264 | 167.99 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 14 |
| 336 | 168.55 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 356 | 168.71 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 489 | 169.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 21 |
| 510 | 169.60 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 529 | 169.69 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 553 | 169.84 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 21 |
| 576 | 169.94 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 584 | 169.96 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 624 | 170.15 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 686 | 170.48 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 724 | 170.64 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 732 | 170.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 785 | 170.92 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 790 | 170.93 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 794 | 170.93 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 807 | 171.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 4 |
| 811 | 171.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 17 |
| 827 | 171.07 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 839 | 171.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 840 | 171.12 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 910 | 171.33 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 931 | 171.42 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 3 |
| 975 | 171.57 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 999 | 171.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 23 |