Os07g0301000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0301000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.75 | 0.476 | 7.73 | -1.91 | 0.956 | 1.03 | 0.71 | -1.32 | 0.974 | 18.7 | 28.4 | 4238 | -- | -- |
| 103.15 | 0.473 | 7.76 | -2.12 | 0.925 | 1.04 | 0.587 | -- | 0.954 | 18.6 | 26.7 | 4233 | -- | -- |
| 103.83 | 0.475 | 7.73 | -1.95 | 0.951 | 1.03 | -- | -1.13 | 0.97 | 18.5 | 28.1 | 4232 | -- | -- |
| 104.11 | 0.475 | 7.76 | -2.18 | 0.942 | 0.955 | -- | -- | 0.937 | 18.5 | 26.6 | 4249 | -- | -- |
| 151.14 | 0.573 | 7.71 | -1.98 | -- | 1.05 | -- | -0.905 | 0.965 | -- | 27.6 | 4249 | -- | -- |
| 129.88 | 0.534 | 7.78 | -2.53 | 0.973 | -- | 0.701 | -- | 0.836 | 18.4 | -- | -- | -- | -- |
| 131.05 | 0.536 | 7.78 | -2.53 | 0.977 | -- | -- | -- | 0.839 | 18.2 | -- | -- | -- | -- |
| 150.57 | 0.571 | 7.74 | -2.18 | -- | 1.01 | -- | -- | 0.931 | -- | 26.64 | 4249 | -- | -- |
| 117.97 | 0.506 | 7.61 | -- | 1 | 2.07 | -- | -- | 1.63 | 18.5 | 19.1 | 46767 | -- | -- |
| 180.59 | 0.628 | 7.76 | -2.56 | -- | -- | -- | -- | 0.817 | -- | -- | -- | -- | -- |
| 300.18 | 0.81 | 7.72 | -- | 1.01 | -- | -- | -- | 1.12 | 18.1 | -- | -- | -- | -- |
| 167.05 | 0.602 | 7.57 | -- | -- | 2.11 | -- | -- | 1.66 | -- | 19.17 | 47520 | -- | -- |
| 353.44 | 0.878 | 7.7 | -- | -- | -- | -- | -- | 1.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.40 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 2 | 102.55 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 5 |
| 7 | 102.71 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 20 |
| 8 | 102.73 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 18 |
| 33 | 102.90 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 16 |
| 39 | 102.92 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 19 |
| 41 | 102.93 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 4 | NA |
| 52 | 102.95 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 14 |
| 57 | 102.95 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 80 | 102.99 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 12 |
| 124 | 103.05 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 21 |
| 149 | 103.08 | temperature | 25.0 | 4320 | > th | dose dependent | no | NA | NA |
| 177 | 103.14 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 284 | 103.40 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 290 | 103.45 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 313 | 103.59 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 314 | 103.59 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 9 |
| 322 | 103.63 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 12 |
| 350 | 103.76 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 3 |
| 395 | 104.00 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 448 | 104.39 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 450 | 104.42 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 464 | 104.57 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 493 | 104.79 | wind | 1.0 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 497 | 104.83 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 502 | 104.87 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 517 | 104.99 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 540 | 105.08 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 545 | 105.10 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 557 | 105.15 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 606 | 105.36 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 612 | 105.36 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 6 | 8 |
| 625 | 105.40 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 13 | 9 |
| 628 | 105.41 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 644 | 105.43 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 13 | 10 |
| 678 | 105.50 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 5 |
| 680 | 105.50 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 710 | 105.54 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 714 | 105.54 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 14 |
| 725 | 105.55 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 16 |
| 782 | 105.61 | temperature | 20.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 794 | 105.62 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 10 |
| 810 | 105.63 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 820 | 105.63 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 6 | 13 |
| 846 | 105.65 | temperature | 25.0 | 14400 | < th | dose independent | sin | 20 | NA |
| 909 | 105.68 | temperature | 25.0 | 14400 | > th | dose independent | sin | 20 | NA |
| 971 | 105.71 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 989 | 105.72 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 10 |
| 991 | 105.72 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 12 |