Os07g0300900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lysine-sensitive aspartate kinase.
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Os07g0300900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lysine-sensitive aspartate kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.91 | 0.325 | 9.71 | -1.07 | 0.603 | 0.679 | -0.606 | -1.2 | -0.732 | 10.9 | 25.9 | 1416 | -- | -- |
| 48.49 | 0.324 | 9.68 | -0.771 | 0.613 | 0.561 | -0.574 | -- | -0.672 | 10.7 | 26.6 | 9059 | -- | -- |
| 49.31 | 0.327 | 9.7 | -1.05 | 0.61 | 0.666 | -- | -1.05 | -0.715 | 11 | 26.1 | 1394 | -- | -- |
| 49.73 | 0.328 | 9.68 | -0.792 | 0.598 | 0.559 | -- | -- | -0.663 | 10.7 | 26.7 | 9056 | -- | -- |
| 70.38 | 0.393 | 9.66 | -0.686 | -- | 0.359 | -- | -0.305 | -0.513 | -- | 26.74 | 1514 | -- | -- |
| 60.15 | 0.364 | 9.62 | -0.499 | 0.569 | -- | -0.589 | -- | -0.422 | 10.7 | -- | -- | -- | -- |
| 61.59 | 0.368 | 9.62 | -0.523 | 0.572 | -- | -- | -- | -0.424 | 10.7 | -- | -- | -- | -- |
| 70.64 | 0.393 | 9.65 | -0.626 | -- | 0.346 | -- | -- | -0.495 | -- | 26.74 | 1514 | -- | -- |
| 62.55 | 0.368 | 9.64 | -- | 0.601 | 0.363 | -- | -- | -0.496 | 10.9 | 28.8 | 8546 | -- | -- |
| 81.8 | 0.423 | 9.64 | -0.534 | -- | -- | -- | -- | -0.427 | -- | -- | -- | -- | -- |
| 68.8 | 0.388 | 9.61 | -- | 0.576 | -- | -- | -- | -0.366 | 10.8 | -- | -- | -- | -- |
| 80.77 | 0.42 | 9.64 | -- | -- | 0.3 | -- | -- | -0.418 | -- | 26.74 | 1514 | -- | -- |
| 89.32 | 0.441 | 9.62 | -- | -- | -- | -- | -- | -0.368 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 22 | 47.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 57 | 47.82 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 68 | 47.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 91 | 47.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 155 | 48.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 278 | 48.42 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 281 | 48.43 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 354 | 48.50 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 418 | 48.60 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 452 | 48.65 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 5 |
| 468 | 48.67 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 5 |
| 471 | 48.68 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 474 | 48.69 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 495 | 48.72 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 2 |
| 499 | 48.72 | temperature | 25 | 14400 | > th | dose independent | rect. | 4 | 10 |
| 500 | 48.72 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 3 |
| 534 | 48.77 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 569 | 48.81 | temperature | 25 | 14400 | > th | dose independent | sin | 2 | NA |
| 577 | 48.81 | temperature | 25 | 14400 | > th | dose independent | rect. | 4 | 16 |
| 622 | 48.84 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 8 |
| 627 | 48.84 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 641 | 48.85 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 643 | 48.85 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 650 | 48.86 | temperature | 25 | 14400 | < th | dose independent | sin | 2 | NA |
| 666 | 48.87 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 13 |
| 731 | 48.91 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 775 | 48.93 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 785 | 48.94 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 2 |
| 814 | 48.96 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 831 | 48.96 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 933 | 49.02 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 12 |