Os07g0299600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0299600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.28 | 0.227 | 11.5 | -0.0086 | 0.0631 | 0.37 | -0.259 | 0.525 | 0.238 | 19.8 | 39.53 | 71 | -- | -- |
| 23.67 | 0.227 | 11.5 | -0.0108 | 0.0565 | 0.372 | -0.302 | -- | 0.239 | 18.1 | 39.5 | 57 | -- | -- |
| 23.43 | 0.225 | 11.5 | -0.00306 | 0.0638 | 0.351 | -- | 0.444 | 0.236 | 21.2 | 39.65 | 70 | -- | -- |
| 23.71 | 0.227 | 11.5 | -0.01 | 0.0754 | 0.324 | -- | -- | 0.222 | 20.9 | 39.63 | 59 | -- | -- |
| 23.66 | 0.227 | 11.5 | -0.00594 | -- | 0.383 | -- | 0.434 | 0.234 | -- | 39.53 | 70 | -- | -- |
| 25.58 | 0.237 | 11.5 | 0.00619 | 0.157 | -- | 0.00566 | -- | 0.222 | 23.2 | -- | -- | -- | -- |
| 25.58 | 0.237 | 11.5 | 0.00598 | 0.157 | -- | -- | -- | 0.222 | 23.2 | -- | -- | -- | -- |
| 23.96 | 0.228 | 11.5 | -0.00689 | -- | 0.358 | -- | -- | 0.231 | -- | 39.49 | 59 | -- | -- |
| 23.7 | 0.227 | 11.5 | -- | 0.0722 | 0.316 | -- | -- | 0.228 | 21.6 | 39.5 | 57 | -- | -- |
| 27.11 | 0.243 | 11.5 | 0.00981 | -- | -- | -- | -- | 0.224 | -- | -- | -- | -- | -- |
| 25.58 | 0.237 | 11.5 | -- | 0.157 | -- | -- | -- | 0.222 | 23.2 | -- | -- | -- | -- |
| 23.97 | 0.228 | 11.5 | -- | -- | 0.358 | -- | -- | 0.229 | -- | 39.5 | 59 | -- | -- |
| 27.12 | 0.243 | 11.5 | -- | -- | -- | -- | -- | 0.223 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.37 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 2 | 22.39 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 3 | 22.39 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 4 | 22.41 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 4 |
| 8 | 22.54 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 11 | 22.58 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 13 | 22.58 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 16 | 22.58 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 36 | 22.67 | temperature | 25.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 84 | 22.77 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 146 | 22.94 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 17 | NA |
| 154 | 22.95 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 184 | 23.00 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 185 | 23.00 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 193 | 23.01 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 200 | 23.02 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 207 | 23.02 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 211 | 23.03 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 232 | 23.04 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 241 | 23.05 | wind | 1.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 249 | 23.05 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 281 | 23.08 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 314 | 23.09 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 320 | 23.10 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 333 | 23.11 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 338 | 23.11 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 339 | 23.11 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 361 | 23.12 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 362 | 23.12 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 363 | 23.12 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 365 | 23.12 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 372 | 23.12 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 407 | 23.14 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 409 | 23.14 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 448 | 23.15 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 456 | 23.15 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 479 | 23.16 | temperature | 30.0 | 90 | > th | dose independent | sin | 5 | NA |
| 481 | 23.16 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 541 | 23.17 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 543 | 23.17 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 544 | 23.17 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 547 | 23.17 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 553 | 23.17 | temperature | 20.0 | 720 | > th | dose independent | rect. | 8 | 19 |
| 554 | 23.17 | radiation | 30.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 583 | 23.18 | radiation | 10.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 589 | 23.18 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 612 | 23.18 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 9 |
| 621 | 23.18 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 7 | 15 |
| 626 | 23.19 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 627 | 23.19 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 633 | 23.19 | temperature | 30.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 675 | 23.19 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 694 | 23.19 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 715 | 23.20 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 2 | NA |
| 720 | 23.20 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 777 | 23.21 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 779 | 23.21 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 790 | 23.21 | temperature | 25.0 | 720 | > th | dose independent | rect. | 23 | 12 |
| 800 | 23.21 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 812 | 23.21 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 887 | 23.22 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 897 | 23.22 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 899 | 23.22 | temperature | 20.0 | 14400 | > th | dose dependent | no | NA | NA |
| 980 | 23.22 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 22 |