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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0298100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0243) R2 : 0.00284
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0584 (0.0512) R2dN8 : 0.00367 R2N8 : 0.00284
σ : 0.458
deviance : 96.32
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
88.83 0.443 3.29 1.01 0.277 0.569 -0.381 -4.49 0.00781 5.98 29.9 1560 -- --
90.03 0.442 3.39 0.179 0.285 0.122 -0.291 -- -0.0275 5.75 33.8 7455 -- --
88.98 0.439 3.29 1.01 0.283 0.581 -- -4.44 -0.0198 5.85 30 2684 -- --
90.25 0.442 3.38 0.179 0.29 0.13 -- -- -0.0196 6.16 33.73 7479 -- --
92.92 0.449 3.3 1.11 -- 0.641 -- -5.04 -0.0339 -- 30.2 2684 -- --
90.95 0.447 3.39 0.149 0.293 -- -0.382 -- -0.0493 6.05 -- -- -- --
91.31 0.447 3.39 0.146 0.291 -- -- -- -0.0479 6.03 -- -- -- --
94.44 0.453 3.39 0.173 -- 0.128 -- -- -0.00392 -- 33.98 7557 -- --
91.1 0.445 3.39 -- 0.299 0.116 -- -- -0.0388 6.12 33.7 7480 -- --
95.69 0.457 3.4 0.154 -- -- -- -- -0.0413 -- -- -- -- --
91.87 0.448 3.39 -- 0.293 -- -- -- -0.0641 6 -- -- -- --
95.41 0.455 3.39 -- -- 0.128 -- -- -0.0049 -- 34 7557 -- --
96.32 0.458 3.4 -- -- -- -- -- -0.0584 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 79.12 humidity 80.0 10 < th dose independent rect. 6 2
3 79.51 radiation 10.0 30 > th dose independent rect. 7 1
6 79.78 humidity 80.0 10 < th dose independent rect. 24 8
25 81.08 temperature 25.0 30 > th dose independent rect. 7 1
34 81.74 radiation 10.0 10 > th dose independent rect. 16 16
56 84.39 radiation 1.0 43200 < th dose dependent rect. 3 1
57 84.50 atmosphere 1000.0 30 > th dose independent rect. 3 23
58 84.56 atmosphere 1005.0 90 > th dose dependent rect. 2 1
59 84.57 atmosphere 1005.0 30 > th dose independent rect. 7 1
61 84.77 atmosphere 1005.0 10 > th dose dependent rect. 2 2
67 84.95 temperature 15.0 10 > th dose independent rect. 3 23
69 85.13 humidity 90.0 10 > th dose dependent rect. 2 1
71 85.22 temperature 25.0 90 > th dose independent rect. 1 1
78 85.36 temperature 25.0 90 > th dose dependent rect. 1 2
90 85.43 wind 9.0 1440 < th dose independent rect. 3 1
91 85.43 temperature 10.0 1440 > th dose independent rect. 3 1
94 85.43 temperature 30.0 1440 < th dose independent rect. 3 1
98 85.43 humidity 50.0 1440 > th dose independent rect. 3 1
107 85.43 atmosphere 995.0 1440 > th dose independent rect. 3 1
108 85.43 radiation 1.0 1440 < th dose independent rect. 3 1
128 85.43 temperature 10.0 1440 > th dose independent rect. 4 23
143 85.50 wind 3.0 10 < th dose independent rect. 2 1
147 85.53 temperature 20.0 10 > th dose dependent rect. 7 1
150 85.54 atmosphere 1005.0 30 > th dose independent rect. 2 1
151 85.54 humidity 90.0 10 < th dose dependent rect. 7 1
153 85.55 wind 5.0 30 < th dose dependent rect. 2 1
158 85.57 wind 1.0 30 > th dose independent rect. 2 1
162 85.57 temperature 10.0 30 > th dose independent rect. 2 1
164 85.57 temperature 30.0 30 < th dose independent rect. 2 1
165 85.57 humidity 50.0 30 > th dose independent rect. 2 1
168 85.57 atmosphere 995.0 30 > th dose independent rect. 2 1
169 85.57 atmosphere 1010.0 30 < th dose independent rect. 2 1
171 85.57 radiation 1.0 30 < th dose independent rect. 2 1
176 85.57 precipitation 0.1 30 < th dose independent rect. 2 1
180 85.57 temperature 10.0 30 > th dose dependent rect. 2 1
182 85.57 atmosphere 1015.0 10 < th dose dependent rect. 2 1
184 85.57 radiation 1.0 30 < th dose dependent rect. 2 1
189 85.57 precipitation 0.1 30 < th dose dependent rect. 2 1
195 85.59 temperature 30.0 30 < th dose dependent rect. 2 1
196 85.59 humidity 50.0 30 > th dose dependent rect. 2 1
205 85.62 humidity 90.0 90 < th dose dependent rect. 1 7
206 85.63 humidity 90.0 30 > th dose independent rect. 2 1
254 85.77 precipitation 0.1 30 < th dose independent rect. 3 23
255 85.77 precipitation 0.1 30 < th dose dependent rect. 3 23
257 85.78 atmosphere 995.0 10 > th dose independent rect. 8 23
263 85.82 wind 5.0 10 < th dose dependent rect. 7 1
267 85.93 temperature 15.0 30 > th dose independent rect. 8 23
274 85.97 wind 9.0 30 < th dose independent rect. 3 23
277 85.99 wind 5.0 30 < th dose independent rect. 7 1
289 86.10 wind 1.0 30 > th dose independent rect. 7 1
298 86.33 temperature 25.0 90 < th dose independent rect. 6 1
299 86.34 atmosphere 995.0 720 > th dose independent rect. 23 16
306 86.40 humidity 50.0 30 > th dose independent rect. 3 23
309 86.43 atmosphere 995.0 10 > th dose dependent rect. 7 1
317 86.51 radiation 20.0 10 < th dose independent rect. 7 1
323 86.56 temperature 10.0 10 > th dose independent rect. 7 1
325 86.56 temperature 30.0 10 < th dose independent rect. 7 1
326 86.56 humidity 50.0 10 > th dose independent rect. 7 1
328 86.56 atmosphere 995.0 10 > th dose independent rect. 7 1
329 86.56 atmosphere 1015.0 10 < th dose independent rect. 7 1
341 86.58 precipitation 0.1 10 < th dose independent rect. 7 1
344 86.58 precipitation 0.1 10 < th dose dependent rect. 7 1
346 86.59 wind 1.0 10 > th dose independent rect. 8 23
347 86.59 wind 9.0 30 < th dose independent rect. 8 23
349 86.60 wind 9.0 1440 < th dose independent rect. 8 1
352 86.60 temperature 10.0 1440 > th dose independent rect. 8 1
357 86.60 humidity 50.0 1440 > th dose independent rect. 8 1
359 86.60 atmosphere 995.0 1440 > th dose independent rect. 8 1
362 86.60 atmosphere 1015.0 1440 < th dose independent rect. 8 1
363 86.60 temperature 10.0 1440 > th dose independent rect. 9 23
367 86.62 radiation 10.0 10 > th dose independent sin 11 NA
369 86.62 humidity 80.0 14400 < th dose dependent rect. 1 8
371 86.67 radiation 40.0 30 < th dose independent rect. 7 1
376 86.72 radiation 10.0 30 < th dose independent rect. 3 23
379 86.73 precipitation 0.1 10 < th dose independent rect. 8 23
380 86.73 precipitation 0.1 10 < th dose dependent rect. 8 23
392 86.84 wind 7.0 14400 < th dose dependent rect. 11 1
400 86.87 radiation 1.0 10 > th dose dependent rect. 7 1
402 86.91 temperature 10.0 720 > th dose independent rect. 15 8
403 86.91 temperature 10.0 720 > th dose independent rect. 23 16
416 86.97 wind 1.0 14400 > th dose dependent rect. 11 1
420 86.99 humidity 90.0 90 < th dose independent rect. 2 1
421 86.99 wind 5.0 14400 < th dose independent rect. 11 2
425 86.99 radiation 10.0 30 < th dose dependent rect. 3 23
433 87.04 wind 9.0 720 < th dose independent rect. 15 8
434 87.04 temperature 10.0 720 > th dose independent rect. 3 8
435 87.04 atmosphere 995.0 720 > th dose independent rect. 3 8
436 87.04 temperature 10.0 720 > th dose independent rect. 11 16
438 87.06 wind 5.0 14400 < th dose independent rect. 9 6
448 87.11 humidity 80.0 10 < th dose independent rect. 20 12
454 87.14 wind 5.0 14400 < th dose independent rect. 9 4
455 87.14 wind 5.0 14400 > th dose independent rect. 9 6
461 87.16 wind 5.0 14400 < th dose independent rect. 8 9
462 87.17 wind 5.0 14400 > th dose independent rect. 11 2
465 87.18 wind 5.0 14400 > th dose independent rect. 8 9
479 87.24 humidity 90.0 90 < th dose independent rect. 1 3
494 87.27 humidity 50.0 30 > th dose independent rect. 8 23
500 87.28 humidity 50.0 720 > th dose independent rect. 3 8
503 87.29 humidity 80.0 14400 < th dose dependent rect. 7 1
507 87.30 wind 5.0 14400 > th dose independent rect. 9 4
519 87.32 wind 9.0 720 < th dose independent rect. 3 8
522 87.33 wind 3.0 14400 > th dose dependent rect. 8 7
528 87.35 atmosphere 995.0 720 > th dose independent rect. 7 8
539 87.38 wind 9.0 720 < th dose independent rect. 15 16
543 87.40 wind 7.0 14400 > th dose independent rect. 9 1
548 87.41 humidity 80.0 14400 < th dose independent rect. 7 1
551 87.42 wind 5.0 14400 > th dose independent rect. 22 19
554 87.43 wind 5.0 14400 < th dose independent rect. 23 18
563 87.45 radiation 10.0 10 > th dose independent rect. 13 19
569 87.47 wind 9.0 720 < th dose independent rect. 19 8
585 87.49 atmosphere 1015.0 10 < th dose dependent rect. 7 1
596 87.52 precipitation 0.1 720 < th dose independent rect. 15 8
597 87.52 precipitation 0.1 720 < th dose dependent rect. 15 8
608 87.54 wind 5.0 14400 < th dose independent sin 1 NA
610 87.54 precipitation 0.1 720 < th dose independent rect. 23 16
611 87.54 precipitation 0.1 720 < th dose dependent rect. 23 16
612 87.55 precipitation 0.1 1440 < th dose independent rect. 8 1
617 87.55 precipitation 0.1 1440 < th dose dependent rect. 8 1
647 87.57 wind 5.0 14400 < th dose independent rect. 8 19
658 87.58 wind 5.0 14400 > th dose independent sin 1 NA
695 87.62 wind 5.0 14400 > th dose independent rect. 8 19
718 87.64 humidity 90.0 90 < th dose independent rect. 1 20
737 87.67 precipitation 0.1 720 < th dose independent rect. 3 8
739 87.67 humidity 80.0 720 > th dose dependent rect. 3 1
742 87.67 precipitation 0.1 720 < th dose dependent rect. 3 8
744 87.68 humidity 80.0 14400 < th dose independent rect. 7 3
764 87.71 humidity 80.0 14400 > th dose independent rect. 8 1
793 87.73 precipitation 0.1 14400 < th dose independent rect. 24 11
799 87.73 radiation 1.0 90 > th dose independent rect. 8 22
803 87.73 precipitation 0.1 14400 < th dose dependent rect. 24 11
814 87.74 temperature 30.0 30 < th dose dependent rect. 7 1
819 87.75 precipitation 0.1 14400 > th dose independent rect. 24 10
852 87.77 precipitation 0.1 720 < th dose independent rect. 19 8
863 87.77 precipitation 0.1 720 < th dose dependent rect. 19 8
865 87.78 humidity 90.0 720 > th dose independent rect. 3 1
878 87.79 precipitation 0.1 720 < th dose independent rect. 7 8
885 87.79 precipitation 0.1 720 < th dose dependent rect. 7 8
938 87.83 radiation 40.0 30 < th dose dependent rect. 7 1
957 87.84 humidity 90.0 90 < th dose independent rect. 1 22
988 87.87 humidity 80.0 14400 > th dose independent rect. 7 3