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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0297100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : MATH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.79 (0.0308) R2 : 0.199
β1 : 0.00793 (0.113) R2dD : 8.54e-06 R2D : -0.000524
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.74 (0.45) R2dE : 0.0651 R2E : 0.0643
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 13.9 (1.6) R2dD*E : 0.131 R2D*E : 0.132
γ1 : -0.0717 (0.0658) R2dN8 : 0.00278 R2N8 : 0.00158
σ : 0.576
deviance : 152.8
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 0.3663
memory length : 13
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 0.36
open length of G : 3.14

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
151.83 0.579 2.79 0.0136 0.124 2.82 -0.0598 13.8 -0.0702 11.8 0.3714 14 0.357 3.14
171.75 0.615 2.78 0.0145 0.0923 2.99 -0.418 -- -0.0409 13.8 0.3714 14 0.357 3.14
151.84 0.574 2.79 0.0111 0.124 2.82 -- 13.9 -0.0706 11.6 0.3678 13 0.359 3.14
172.13 0.615 2.78 0.000241 0.114 3.01 -- -- -0.0444 11.1 0.3714 14 0.357 3.14
152.8 0.576 2.79 0.00793 -- 2.74 -- 13.9 -0.0717 -- 0.3663 13 0.36 3.14
189.14 0.645 2.78 0.0268 0.00553 -- -0.653 -- -0.0562 15.8 -- -- -- --
189.97 0.645 2.78 0.0176 0.0864 -- -- -- -0.0603 9.49 -- -- -- --
172.95 0.615 2.78 -0.00218 -- 2.96 -- -- -0.0456 -- 0.3663 13 0.36 3.14
172.13 0.614 2.78 -- 0.114 3.01 -- -- -0.0444 11.1 0.3714 14 0.357 3.14
190.41 0.645 2.79 0.017 -- -- -- -- -0.06 -- -- -- -- --
189.98 0.645 2.79 -- 0.0864 -- -- -- -0.0622 9.48 -- -- -- --
172.95 0.614 2.78 -- -- 2.96 -- -- -0.0453 -- 0.3663 13 0.36 3.14
190.42 0.644 2.79 -- -- -- -- -- -0.0619 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 152.84 wind 1 10 < th dose dependent rect. 1 2
10 160.53 wind 1 10 < th dose independent rect. 1 1
22 169.48 temperature 20 10 < th dose independent rect. 19 1
27 169.48 temperature 20 10 < th dose dependent rect. 20 1
50 169.77 humidity 90 90 > th dose independent rect. 18 1
51 169.78 humidity 90 90 > th dose dependent rect. 18 1
58 172.39 atmosphere 1005 30 > th dose dependent rect. 1 2
64 173.37 temperature 20 10 < th dose independent rect. 2 1
83 175.05 wind 3 10 < th dose dependent rect. 20 1
120 176.42 humidity 90 10 > th dose dependent rect. 24 3
137 176.89 humidity 90 270 > th dose dependent rect. 14 6
143 176.99 humidity 90 270 > th dose independent rect. 15 5
157 177.27 radiation 40 1440 > th dose dependent rect. 15 1
181 177.55 radiation 40 1440 > th dose independent rect. 15 1
224 178.33 wind 3 10 < th dose independent rect. 19 2
258 178.96 wind 3 10 < th dose dependent rect. 22 5
312 179.44 atmosphere 1005 90 > th dose independent rect. 24 2
322 179.55 temperature 25 10 < th dose dependent rect. 2 1
338 179.73 atmosphere 1005 10 > th dose independent rect. 1 2
395 180.17 temperature 25 10 < th dose dependent rect. 24 3
399 180.21 wind 3 10 < th dose independent rect. 16 5
466 180.61 humidity 90 10 > th dose independent rect. 24 3
492 180.72 humidity 90 10 > th dose dependent rect. 22 5
496 180.73 wind 5 270 < th dose dependent rect. 21 5
525 180.91 temperature 20 10 < th dose independent rect. 24 3
548 181.06 atmosphere 1005 30 > th dose independent rect. 19 1
626 181.42 wind 3 10 < th dose dependent rect. 16 11
634 181.48 wind 3 270 < th dose independent rect. 21 5
641 181.49 wind 3 10 < th dose dependent rect. 16 5
649 181.55 wind 3 10 < th dose dependent rect. 14 13
671 181.69 wind 5 10 > th dose dependent rect. 12 1
786 182.21 wind 1 10 < th dose dependent rect. 24 23
792 182.26 humidity 50 720 < th dose dependent rect. 15 1
807 182.36 humidity 90 30 > th dose dependent rect. 9 12
896 182.65 humidity 60 270 > th dose dependent rect. 21 5
937 182.79 temperature 20 90 > th dose independent rect. 24 1
940 182.79 wind 5 270 < th dose independent rect. 16 4
943 182.81 atmosphere 995 270 > th dose dependent rect. 22 4
955 182.85 radiation 40 10 < th dose independent rect. 13 13