Os07g0296900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0296900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 235.28 | 0.721 | 2.81 | 0.0954 | 0.117 | 1.16 | 0.379 | 7.92 | 0.0433 | 4.96 | 8.034 | 22 | 10.8 | 4.04 |
| 251.99 | 0.739 | 2.81 | 0.133 | 0.169 | 2.52 | -0.206 | -- | 0.0625 | 3.61 | 7.632 | 28 | 10.2 | 4.48 |
| 235.53 | 0.715 | 2.81 | 0.0949 | 0.125 | 1.2 | -- | 7.75 | 0.042 | 3.69 | 7.963 | 21 | 10.8 | 4.03 |
| 252.07 | 0.739 | 2.81 | 0.142 | 0.151 | 2.49 | -- | -- | 0.0638 | 3.59 | 7.515 | 28 | 10.4 | 4.46 |
| 236.37 | 0.716 | 2.81 | 0.0994 | -- | 1.12 | -- | 7.87 | 0.0441 | -- | 7.544 | 21 | 10.8 | 4.17 |
| 272.24 | 0.774 | 2.82 | 0.149 | 0.026 | -- | 0.52 | -- | 0.0387 | 9.87 | -- | -- | -- | -- |
| 272.97 | 0.774 | 2.82 | 0.166 | 0.0819 | -- | -- | -- | 0.0377 | 5.3 | -- | -- | -- | -- |
| 253.06 | 0.741 | 2.81 | 0.146 | -- | 2.44 | -- | -- | 0.0659 | -- | 7.302 | 28 | 10.7 | 4.11 |
| 252.33 | 0.74 | 2.82 | -- | 0.153 | 2.53 | -- | -- | 0.0476 | 3.61 | 7.303 | 28 | 10.7 | 4.51 |
| 273.32 | 0.773 | 2.82 | 0.169 | -- | -- | -- | -- | 0.0397 | -- | -- | -- | -- | -- |
| 273.69 | 0.774 | 2.82 | -- | 0.0848 | -- | -- | -- | 0.0193 | 5.22 | -- | -- | -- | -- |
| 253.62 | 0.742 | 2.82 | -- | -- | 2.45 | -- | -- | 0.05 | -- | 7.276 | 28 | 10.8 | 4.16 |
| 274.07 | 0.773 | 2.82 | -- | -- | -- | -- | -- | 0.0211 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 235.99 | radiation | 10.0 | 10 | < th | dose independent | rect. | 11 | 4 |
| 9 | 238.59 | wind | 3.0 | 30 | > th | dose independent | rect. | 1 | 5 |
| 12 | 238.85 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 11 | 3 |
| 26 | 240.97 | wind | 3.0 | 30 | > th | dose dependent | rect. | 1 | 6 |
| 37 | 241.76 | wind | 3.0 | 30 | > th | dose independent | rect. | 1 | 1 |
| 41 | 242.03 | radiation | 10.0 | 270 | < th | dose independent | rect. | 11 | 1 |
| 52 | 243.13 | wind | 3.0 | 30 | > th | dose dependent | rect. | 1 | 1 |
| 136 | 247.14 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 157 | 248.48 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 163 | 248.48 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 169 | 248.51 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 170 | 248.65 | wind | 3.0 | 90 | > th | dose independent | rect. | 24 | 9 |
| 173 | 248.72 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 175 | 248.79 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 177 | 248.95 | wind | 3.0 | 90 | > th | dose dependent | rect. | 24 | 9 |
| 178 | 249.01 | wind | 3.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 180 | 249.04 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 2 | 1 |
| 190 | 249.46 | wind | 3.0 | 270 | > th | dose independent | rect. | 22 | 13 |
| 191 | 249.53 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 192 | 249.56 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 196 | 249.67 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 201 | 249.82 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 19 | 11 |
| 214 | 250.08 | wind | 5.0 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 217 | 250.12 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 2 | 3 |
| 225 | 250.28 | wind | 3.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 239 | 250.41 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 20 | 6 |
| 244 | 250.48 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 249 | 250.51 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 257 | 250.55 | wind | 7.0 | 90 | > th | dose dependent | rect. | 23 | 9 |
| 289 | 250.60 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 22 | 1 |
| 291 | 250.60 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 22 | 1 |
| 296 | 250.65 | wind | 5.0 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 301 | 250.70 | wind | 5.0 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 311 | 250.79 | humidity | 90.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 321 | 250.93 | wind | 5.0 | 1440 | > th | dose independent | rect. | 19 | 10 |
| 330 | 250.97 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 20 | 6 |
| 342 | 251.07 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 361 | 251.21 | wind | 5.0 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 392 | 251.49 | wind | 9.0 | 1440 | < th | dose dependent | sin | 12 | NA |
| 393 | 251.51 | wind | 3.0 | 270 | > th | dose independent | sin | 7 | NA |
| 402 | 251.55 | wind | 1.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 423 | 251.65 | wind | 3.0 | 270 | < th | dose independent | sin | 7 | NA |
| 425 | 251.67 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 444 | 251.79 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 22 | 3 |
| 456 | 251.87 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 459 | 251.89 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 22 | 3 |
| 513 | 252.24 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 558 | 252.49 | wind | 3.0 | 270 | < th | dose independent | rect. | 22 | 13 |
| 560 | 252.50 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 562 | 252.53 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 1 |
| 565 | 252.53 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 588 | 252.61 | wind | 3.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 593 | 252.63 | wind | 5.0 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 595 | 252.64 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 625 | 252.80 | wind | 3.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 656 | 252.97 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 681 | 253.09 | radiation | 10.0 | 10 | < th | dose independent | rect. | 11 | 16 |
| 712 | 253.21 | radiation | 10.0 | 10 | < th | dose independent | rect. | 14 | 1 |
| 716 | 253.24 | wind | 5.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 721 | 253.25 | wind | 5.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 755 | 253.39 | radiation | 10.0 | 90 | < th | dose independent | rect. | 10 | 17 |
| 799 | 253.59 | wind | 1.0 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 913 | 253.90 | wind | 1.0 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 936 | 254.00 | wind | 1.0 | 270 | > th | dose dependent | rect. | 22 | 9 |