Os07g0295800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Acid phosphatase/vanadium-dependent haloperoxidase family protein.
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Os07g0295800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Acid phosphatase/vanadium-dependent haloperoxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.25 | 0.231 | 10.2 | -0.208 | 0.35 | -0.397 | 0.356 | 0.114 | -0.113 | 20 | 1014 | 5762 | -- | -- |
| 24.31 | 0.23 | 10.2 | -0.23 | 0.346 | -0.4 | 0.345 | -- | -0.119 | 19.9 | 1014 | 5756 | -- | -- |
| 24.6 | 0.231 | 10.2 | -0.226 | 0.352 | -0.396 | -- | 0.0971 | -0.114 | 19.8 | 1014 | 5688 | -- | -- |
| 24.63 | 0.231 | 10.2 | -0.227 | 0.348 | -0.407 | -- | -- | -0.117 | 19.7 | 1014 | 5656 | -- | -- |
| 31.29 | 0.261 | 10.2 | -0.22 | -- | -0.408 | -- | 0.0923 | -0.114 | -- | 1014 | 5756 | -- | -- |
| 29.89 | 0.256 | 10.2 | -0.327 | 0.359 | -- | 0.302 | -- | -0.194 | 19.9 | -- | -- | -- | -- |
| 30.14 | 0.257 | 10.2 | -0.334 | 0.361 | -- | -- | -- | -0.193 | 19.7 | -- | -- | -- | -- |
| 31.28 | 0.261 | 10.2 | -0.215 | -- | -0.467 | -- | -- | -0.112 | -- | 1014 | 5629 | -- | -- |
| 25.88 | 0.237 | 10.2 | -- | 0.363 | -0.417 | -- | -- | -0.109 | 19.7 | 1014 | 6287 | -- | -- |
| 37.18 | 0.285 | 10.2 | -0.339 | -- | -- | -- | -- | -0.198 | -- | -- | -- | -- | -- |
| 33.08 | 0.269 | 10.2 | -- | 0.364 | -- | -- | -- | -0.156 | 19.7 | -- | -- | -- | -- |
| 32.32 | 0.265 | 10.2 | -- | -- | -0.512 | -- | -- | -0.0924 | -- | 1014 | 5961 | -- | -- |
| 40.2 | 0.296 | 10.2 | -- | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.53 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 3 | 23.91 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 16 | 21 |
| 9 | 24.11 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 21 |
| 18 | 24.28 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 11 | 7 |
| 36 | 24.30 | humidity | 50.0 | 14400 | < th | dose dependent | sin | 17 | NA |
| 55 | 24.31 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 21 |
| 60 | 24.31 | humidity | 50.0 | 14400 | < th | dose dependent | no | NA | NA |
| 62 | 24.31 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 225 | 24.37 | humidity | 50.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 227 | 24.38 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 230 | 24.39 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 11 | 22 |
| 236 | 24.41 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 317 | 24.49 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 19 | 14 |
| 351 | 24.51 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 11 | 22 |
| 356 | 24.53 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 358 | 24.53 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 373 | 24.53 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 378 | 24.55 | humidity | 50.0 | 14400 | < th | dose independent | sin | 20 | NA |
| 380 | 24.55 | humidity | 50.0 | 14400 | < th | dose independent | no | NA | NA |
| 512 | 24.58 | humidity | 50.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 514 | 24.58 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 11 | 13 |
| 515 | 24.58 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 11 | 15 |
| 516 | 24.58 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 11 | 17 |
| 520 | 24.58 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 8 | 21 |
| 531 | 24.59 | humidity | 50.0 | 14400 | > th | dose independent | no | NA | NA |
| 536 | 24.59 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 11 | 9 |
| 545 | 24.59 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 568 | 24.59 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 3 | 17 |
| 612 | 24.59 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 23 | 21 |
| 623 | 24.59 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 21 | 22 |
| 636 | 24.59 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 691 | 24.62 | humidity | 50.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 694 | 24.62 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 695 | 24.62 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 700 | 24.63 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 731 | 24.63 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 737 | 24.64 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 781 | 24.68 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 18 | 16 |
| 789 | 24.69 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 792 | 24.70 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 797 | 24.72 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 8 | 5 |
| 836 | 24.73 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 846 | 24.73 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 7 | 17 |
| 868 | 24.75 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 24 | 12 |
| 895 | 24.78 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 897 | 24.78 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 4 |
| 912 | 24.79 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 11 | 22 |
| 924 | 24.81 | humidity | 50.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 926 | 24.81 | atmosphere | 1015.0 | 4320 | > th | dose dependent | no | NA | NA |
| 934 | 24.81 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 18 | 22 |
| 935 | 24.81 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 941 | 24.82 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 987 | 24.83 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 22 | 23 |
| 989 | 24.84 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 996 | 24.84 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 2 |